Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   AAIB43_RS04560 Genome accession   NZ_CP154366
Coordinates   970740..971456 (-) Length   238 a.a.
NCBI ID   WP_029378924.1    Uniprot ID   A0A418I5B6
Organism   Staphylococcus xylosus strain 14BME10     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 965740..976456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAIB43_RS04540 (AAIB43_04545) - 966410..966634 (+) 225 WP_042362355.1 sulfurtransferase TusA family protein -
  AAIB43_RS04545 (AAIB43_04550) - 967212..968174 (+) 963 WP_069794673.1 LacI family DNA-binding transcriptional regulator -
  AAIB43_RS04550 (AAIB43_04555) - 968258..969742 (+) 1485 WP_069794675.1 sucrose-6-phosphate hydrolase -
  AAIB43_RS04555 (AAIB43_04560) - 969739..970704 (+) 966 WP_069795727.1 carbohydrate kinase -
  AAIB43_RS04560 (AAIB43_04565) agrA 970740..971456 (-) 717 WP_029378924.1 LytTR family DNA-binding domain-containing protein Regulator
  AAIB43_RS04565 (AAIB43_04570) - 971469..972764 (-) 1296 WP_069795726.1 GHKL domain-containing protein -
  AAIB43_RS04570 (AAIB43_04575) - 972794..972931 (-) 138 WP_069795725.1 cyclic lactone autoinducer peptide -
  AAIB43_RS04575 (AAIB43_04580) - 972934..973503 (-) 570 WP_069795724.1 accessory gene regulator AgrB -
  AAIB43_RS04580 (AAIB43_04585) - 974269..975054 (-) 786 WP_047172118.1 carbon-nitrogen family hydrolase -
  AAIB43_RS04585 (AAIB43_04590) - 975419..976048 (-) 630 WP_069795723.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27939.77 Da        Isoelectric Point: 5.4095

>NTDB_id=993060 AAIB43_RS04560 WP_029378924.1 970740..971456(-) (agrA) [Staphylococcus xylosus strain 14BME10]
MKIFICEDDERQREHMVSIINNYIMIEEKPMEIEVATADPYDILERSKNINDIGCYFLDIQLEADINGIKLASEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPDELKSRVIDCLETSESRLKLLSKESSVETIELKRGSNSIYVQYDDVM
FFESSSKSHRLIAHLDNRQIEFYGNLKEIDQLDKRFFRCHNSFVVNRHNIESIDSKSRVVYFKNNEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=993060 AAIB43_RS04560 WP_029378924.1 970740..971456(-) (agrA) [Staphylococcus xylosus strain 14BME10]
GTGAAAATATTCATTTGTGAAGATGATGAAAGACAACGTGAACATATGGTCTCAATTATAAATAACTATATTATGATTGA
AGAAAAACCAATGGAAATTGAAGTTGCGACAGCTGATCCTTATGACATTTTAGAACGCTCAAAGAACATTAATGATATAG
GATGTTACTTTTTAGATATTCAACTAGAAGCTGACATCAACGGAATCAAGCTTGCAAGTGAAATACGTAAACATGATCCG
GTTGGCAATATCATTTTTGTTACAAGTCATAGTGAACTGACATACTTAACATTTGTCTACAAGGTTGCAGCAATGGATTT
CATTTTCAAAGATGATCCAGACGAATTAAAATCAAGAGTGATTGATTGCTTAGAAACATCTGAGTCACGATTAAAACTAC
TTTCAAAAGAAAGCAGTGTCGAGACAATAGAATTAAAACGTGGTAGTAATTCTATTTATGTACAATATGACGATGTGATG
TTCTTCGAATCATCTAGTAAATCCCATCGTTTAATCGCACATCTCGATAATCGTCAAATCGAATTTTATGGAAACCTTAA
AGAAATTGATCAGTTAGATAAACGCTTCTTTAGATGTCATAATAGTTTTGTAGTAAATAGACACAATATTGAGTCCATCG
ACTCTAAATCACGCGTAGTTTATTTTAAAAACAATGAACATTGTTATGCTTCTGTAAGAAATGTTAAAAAGATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A418I5B6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

84.874

100

0.849

Multiple sequence alignment