Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   E0E15_RS08760 Genome accession   NZ_LR027870
Coordinates   1731725..1732327 (-) Length   200 a.a.
NCBI ID   WP_000271554.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BPH2019 isolate BPH2019     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1726725..1737327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0E15_RS08740 yajC 1728221..1728481 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  E0E15_RS08745 tgt 1728500..1729639 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  E0E15_RS08750 queA 1729662..1730687 (-) 1026 WP_001019172.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  E0E15_RS08755 ruvB 1730689..1731693 (-) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  E0E15_RS08760 ruvA 1731725..1732327 (-) 603 WP_000271554.1 Holliday junction branch migration protein RuvA Machinery gene
  E0E15_RS08765 - 1732341..1732796 (-) 456 WP_000368902.1 ACT domain-containing protein -
  E0E15_RS08770 obgE 1732809..1734101 (-) 1293 WP_000496100.1 GTPase ObgE -
  E0E15_RS08775 rpmA 1734456..1734740 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  E0E15_RS08780 - 1734752..1735072 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  E0E15_RS08785 rplU 1735078..1735386 (-) 309 WP_000457385.1 50S ribosomal protein L21 -
  E0E15_RS08790 mreD 1735553..1736083 (-) 531 WP_001259925.1 rod shape-determining protein MreD -
  E0E15_RS08795 mreC 1736083..1736925 (-) 843 WP_000911041.1 rod shape-determining protein MreC -
  E0E15_RS08800 - 1737125..1737244 (-) 120 WP_000840602.1 hypothetical protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22193.35 Da        Isoelectric Point: 5.6622

>NTDB_id=993049 E0E15_RS08760 WP_000271554.1 1731725..1732327(-) (ruvA) [Staphylococcus aureus strain BPH2019 isolate BPH2019]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYSFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=993049 E0E15_RS08760 WP_000271554.1 1731725..1732327(-) (ruvA) [Staphylococcus aureus strain BPH2019 isolate BPH2019]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATAGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATTA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(156-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425