Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   E0E15_RS08245 Genome accession   NZ_LR027870
Coordinates   1632080..1632526 (-) Length   148 a.a.
NCBI ID   WP_001790850.1    Uniprot ID   Q2G2I7
Organism   Staphylococcus aureus strain BPH2019 isolate BPH2019     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1627080..1637526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0E15_RS08215 gcvPA 1628007..1629353 (-) 1347 WP_000019684.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  E0E15_RS08220 gcvT 1629373..1630464 (-) 1092 WP_000093351.1 glycine cleavage system aminomethyltransferase GcvT -
  E0E15_RS08225 - 1630623..1631147 (-) 525 WP_116100530.1 shikimate kinase -
  E0E15_RS08230 - 1631137..1631282 (-) 146 Protein_1544 hypothetical protein -
  E0E15_RS08235 comGF 1631379..1631876 (-) 498 WP_001803317.1 competence type IV pilus minor pilin ComGF Machinery gene
  E0E15_RS08240 comGE 1631794..1632093 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  E0E15_RS08245 comGD 1632080..1632526 (-) 447 WP_001790850.1 competence type IV pilus minor pilin ComGD Machinery gene
  E0E15_RS08250 comGC 1632504..1632815 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  E0E15_RS08260 - 1632984..1634156 (+) 1173 WP_000195429.1 IS256-like element IS256 family transposase -
  E0E15_RS08265 comGB 1634140..1635231 (-) 1092 WP_130827171.1 competence type IV pilus assembly protein ComGB Machinery gene
  E0E15_RS08270 comGA 1635203..1636177 (-) 975 WP_000697228.1 competence type IV pilus ATPase ComGA Machinery gene
  E0E15_RS08275 - 1636229..1636852 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  E0E15_RS08280 - 1636849..1637178 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17213.42 Da        Isoelectric Point: 10.3682

>NTDB_id=993038 E0E15_RS08245 WP_001790850.1 1632080..1632526(-) (comGD) [Staphylococcus aureus strain BPH2019 isolate BPH2019]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIYNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=993038 E0E15_RS08245 WP_001790850.1 1632080..1632526(-) (comGD) [Staphylococcus aureus strain BPH2019 isolate BPH2019]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTTACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2G2I7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993