Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   AAIA70_RS04740 Genome accession   NZ_CP154264
Coordinates   1024768..1027026 (+) Length   752 a.a.
NCBI ID   WP_343291247.1    Uniprot ID   -
Organism   Vibrio harveyi strain 45T2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1019768..1032026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAIA70_RS04715 (AAIA70_04715) - 1020063..1020632 (-) 570 WP_009698318.1 PilZ domain-containing protein -
  AAIA70_RS04720 (AAIA70_04720) lolC 1020897..1022105 (+) 1209 WP_026000130.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  AAIA70_RS04725 (AAIA70_04725) lolD 1022098..1022805 (+) 708 WP_005446689.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  AAIA70_RS04730 (AAIA70_04730) lolE 1022808..1024052 (+) 1245 WP_009698315.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  AAIA70_RS04735 (AAIA70_04735) - 1024250..1024759 (-) 510 WP_005446692.1 DUF2062 domain-containing protein -
  AAIA70_RS04740 (AAIA70_04740) comEC 1024768..1027026 (+) 2259 WP_343291247.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AAIA70_RS04745 (AAIA70_04745) msbA 1027058..1028806 (+) 1749 WP_005446696.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  AAIA70_RS04750 (AAIA70_04750) lpxK 1028812..1029819 (+) 1008 WP_343291248.1 tetraacyldisaccharide 4'-kinase -
  AAIA70_RS04755 (AAIA70_04755) - 1029800..1029979 (+) 180 WP_005378451.1 Trm112 family protein -
  AAIA70_RS04760 (AAIA70_04760) kdsB 1029979..1030737 (+) 759 WP_050902260.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84568.23 Da        Isoelectric Point: 9.4454

>NTDB_id=992780 AAIA70_RS04740 WP_343291247.1 1024768..1027026(+) (comEC) [Vibrio harveyi strain 45T2]
MTLLEKSLTLALFVASVISSAWWPTIPDWRWLLLGIIATGSIIKLRRGLLSIGVISGFMVVIIHGNVMEHQRQALFQAGV
NITINGKVDSPFTQISHGYEGIARVHQVNSQNLLPFFKPKIRLITPFPLAVNSEFTTEVTIKPIFGLLNEAGHDAEKQAV
GKGIVARATVSKDSVWLIRERSSLRTQIIAVVHKHIVQLEHFALICALAFSDRTLLSRYDWQLLRDSGLLHLVSISGLHI
GMAFAFGMSFGVVVRYALPKFVFLPSLFGLATAFLYSWLADFSLPTTRAFSVCLIYLLLKFALIYWSAWRVLLLAVAIQL
CIEPFSALTMSFWLSYLSVVAVLFAVNCVQHSRGNWIRKLGTLFKIQLVLTVLIIPISGLFFAGTSLSSILYNLIFIPWF
GFVVVPLMFIALIITPFSVHLANMLWQWLDWMLVPLTWSLPFALGSWQPLSSQATLWVLVLGVCVLSMRFLNREASGVLF
LVITSLVLWYERKSDGWRIDVLDVGHGLAVLLEKDGEVLLYDTGKTWAYGSIAEQVIAPILYRRGFGSIDMFVVSHADSD
HAGGRAYIERHFAPVRKFSSQNYANYQPCIAGERWKWQALEFEVLWPPKLVKRAYNPHSCVIRVVDTKTDFKLLLTGDIE
AVSEWILVRNPDQLKSDVVIVPHHGSKSSSNPKFVEAIAPKLAIASLAKGNQWGMPANNVVLAYENANAKWLDTGNGGQI
SVLIEQENWYFETKRSETFDPWYRQMLRNGVE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=992780 AAIA70_RS04740 WP_343291247.1 1024768..1027026(+) (comEC) [Vibrio harveyi strain 45T2]
ATGACTCTCTTAGAAAAAAGTTTGACCTTGGCTTTATTTGTAGCGAGCGTTATTTCGTCTGCATGGTGGCCGACGATACC
AGATTGGCGTTGGTTGCTGCTGGGAATAATTGCCACTGGCTCAATAATAAAATTACGACGTGGCTTATTGAGCATAGGCG
TAATTTCGGGCTTTATGGTTGTCATTATCCACGGCAATGTTATGGAGCATCAAAGACAAGCCCTGTTTCAAGCAGGGGTG
AATATTACCATAAATGGCAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGATATGAAGGAATTGCGCGTGTCCATCA
GGTGAATTCTCAAAACTTGTTACCTTTTTTTAAACCGAAAATCCGGTTGATAACGCCTTTCCCACTCGCCGTTAACAGTG
AGTTCACTACCGAAGTGACAATTAAACCCATCTTTGGGCTCTTAAACGAAGCAGGTCATGACGCCGAAAAGCAGGCAGTA
GGAAAGGGTATTGTCGCAAGGGCGACCGTTTCAAAGGATTCAGTGTGGCTTATTCGTGAGCGATCATCATTAAGAACGCA
AATTATCGCCGTCGTTCATAAGCACATTGTTCAGCTTGAACACTTCGCTCTTATTTGTGCTTTGGCGTTTAGTGACCGTA
CGCTTCTGTCTCGATATGACTGGCAACTCCTACGTGATAGTGGCTTACTGCATTTGGTCTCGATTTCGGGTTTACATATA
GGAATGGCGTTTGCTTTTGGTATGAGCTTTGGGGTTGTTGTTAGGTACGCTTTGCCAAAATTTGTCTTTTTACCTTCCTT
GTTTGGGCTTGCTACTGCTTTTTTGTATTCATGGTTAGCAGACTTCTCTTTGCCTACGACTCGAGCTTTTTCAGTATGTT
TGATTTACTTGTTATTAAAGTTTGCTTTGATTTATTGGAGCGCTTGGCGCGTGCTGCTCCTTGCTGTAGCAATACAGTTG
TGCATCGAGCCGTTTTCTGCACTCACTATGAGCTTTTGGCTGTCTTATCTCTCTGTTGTCGCCGTTTTATTTGCAGTGAA
TTGTGTACAACATAGCCGTGGCAATTGGATTAGGAAACTGGGTACCTTATTCAAAATTCAGTTAGTACTCACTGTGTTGA
TCATTCCGATTAGTGGGTTGTTTTTTGCCGGGACGAGCCTCTCCTCTATTTTATATAACCTCATTTTTATCCCTTGGTTC
GGTTTTGTTGTCGTTCCACTGATGTTTATTGCACTTATCATTACCCCGTTTTCAGTGCACTTGGCGAACATGCTGTGGCA
GTGGTTAGATTGGATGCTTGTACCCCTTACTTGGTCTTTGCCATTTGCTTTGGGGAGTTGGCAACCTCTTAGCTCACAGG
CAACGTTGTGGGTGCTGGTATTGGGCGTTTGTGTGCTTTCGATGCGATTTTTAAATCGAGAAGCTTCAGGTGTTTTGTTC
TTGGTCATCACAAGTCTGGTGTTGTGGTATGAACGAAAATCTGATGGTTGGCGTATTGATGTGTTAGATGTTGGGCATGG
ACTGGCAGTGCTCCTAGAAAAAGACGGAGAAGTGCTTTTATATGACACGGGTAAAACATGGGCTTATGGAAGTATTGCTG
AACAAGTTATTGCTCCTATCTTGTATCGCAGAGGGTTCGGTTCTATCGACATGTTTGTCGTCAGTCACGCCGACTCAGAT
CATGCTGGAGGACGTGCATATATCGAAAGGCACTTCGCCCCAGTTCGTAAGTTTAGTAGCCAAAACTACGCTAACTACCA
ACCTTGTATTGCAGGGGAACGATGGAAATGGCAAGCGCTAGAATTTGAAGTTCTTTGGCCTCCGAAGTTGGTTAAACGTG
CATATAACCCACATTCATGCGTGATTCGTGTCGTCGATACCAAAACGGATTTTAAGTTGCTATTAACGGGCGATATTGAA
GCCGTTAGTGAATGGATCTTGGTGAGAAACCCCGATCAGTTAAAAAGTGATGTTGTGATTGTCCCGCATCACGGAAGTAA
AAGCTCTTCTAACCCCAAGTTTGTTGAAGCGATTGCACCAAAACTGGCGATCGCATCTCTGGCAAAAGGGAATCAGTGGG
GAATGCCTGCAAATAACGTGGTTCTAGCGTACGAGAACGCCAATGCGAAATGGCTGGATACGGGGAATGGCGGTCAAATA
AGCGTCCTTATTGAGCAAGAGAATTGGTATTTTGAAACGAAACGAAGTGAGACATTTGACCCTTGGTATAGGCAGATGCT
GCGTAACGGAGTAGAATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-685)

Competence protein (Competence)

(208-466)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio campbellii strain DS40M4

75.266

100

0.753
  comEC Vibrio parahaemolyticus RIMD 2210633

65.293

100

0.653
  comEC Vibrio cholerae strain A1552

40.716

100

0.408

Multiple sequence alignment