Detailed information NTG0099260

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: QMG46_RS23055
• Genome accession: NZ_AP027042
• Coordinates: 5352995..5354398 (+)
• Length: 467 a.a.
• NCBI ID: WP_281850243.1
• Uniprot ID: -
• Organism: Dyella sp. GSA-30
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5347995..5359398

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QMG46_RS23045 (DYGSA30_45950)	-	5349152..5350414 (+)	1263	WP_281850241.1	MFS transporter	-
QMG46_RS23050 (DYGSA30_45960)	-	5350429..5352678 (+)	2250	WP_281850242.1	glycosyl hydrolase family 65 protein	-
QMG46_RS23055 (DYGSA30_45970)	pilR	5352995..5354398 (+)	1404	WP_281850243.1	sigma-54 dependent transcriptional regulator	Regulator
QMG46_RS23060 (DYGSA30_45980)	-	5354483..5356027 (-)	1545	WP_281850244.1	response regulator	-
QMG46_RS23065 (DYGSA30_45990)	-	5356158..5356601 (-)	444	WP_281850245.1	response regulator	-
QMG46_RS23070 (DYGSA30_46000)	-	5356598..5358433 (-)	1836	WP_281850246.1	ATP-binding protein	-

Sequence

Protein

• Length: 467 a.a.
• Molecular weight: 50446.81 Da
• Isoelectric Point: 6.6242

>NTDB_id=99260 QMG46_RS23055 WP_281850243.1 5352995..5354398(+) (pilR) [Dyella sp. GSA-30]
MSQQTVLVIDDERDIRELLTITLGRMDLKVEAVGTVGEARRALSERSYDLCFTDMRLPDGNGQEVIELIAAGHPDTPVAM
ITAYGNVDAAVNALKAGAFDFVSKPVDIQMLRQLVRTALRLADEKRSGAAAKGAGSSDRLIGDSPAMQLVRSTIGKLARN
QAPVYIAGESGVGKELVARLIHEQGPRATGPFVPVNCGAIPSELMESEFFGHRKGSFTGAVNDKEGLFQAAHGGTLFLDE
VAELPLHMQVKLLRAIQEKAVRPIGGRDEVPVDVRILSATHKNLAGLVEQGQFRQDLFYRINVIELRVPPLRERRGDVPL
LSNFILRQLAAKSGSAPGSLMPAALASLESYDFPGNVRELENILERAMAMSDGETIDVSDLMLPQRSSRSDMPPLPQAGQ
AAAAAPTTAAPTQHPGDGGLDDYISNLERTAIIKALEESRYNKTAAAKKLGITFRALRYKLKKLGID

Nucleotide

• Length: 1404 bp

>NTDB_id=99260 QMG46_RS23055 WP_281850243.1 5352995..5354398(+) (pilR) [Dyella sp. GSA-30]
ATGAGCCAACAGACCGTACTGGTCATCGACGACGAACGCGATATTCGCGAGCTGCTTACCATCACCCTGGGTCGTATGGA
CCTGAAGGTGGAAGCGGTGGGGACCGTGGGCGAAGCTCGGCGCGCATTGAGCGAGCGCAGCTACGACCTGTGCTTTACCG
ACATGCGCCTGCCTGACGGCAACGGCCAGGAGGTGATCGAGCTGATCGCCGCCGGCCACCCCGACACCCCCGTGGCCATG
ATCACGGCCTACGGCAACGTCGATGCCGCGGTGAATGCGCTCAAGGCGGGGGCGTTCGACTTCGTCTCCAAGCCGGTCGA
TATCCAGATGCTGCGTCAGCTGGTCCGTACGGCGCTCCGACTGGCCGACGAAAAGCGCAGCGGCGCGGCGGCCAAGGGAG
CCGGTTCGAGCGATCGCCTGATCGGCGACTCGCCGGCCATGCAACTGGTGCGCTCGACGATCGGCAAGCTGGCACGCAAC
CAGGCGCCGGTTTACATCGCTGGCGAATCGGGTGTGGGCAAGGAACTGGTGGCCCGGCTGATCCACGAGCAGGGGCCGCG
CGCCACCGGGCCGTTCGTGCCGGTCAATTGCGGCGCGATTCCCTCCGAGCTGATGGAAAGCGAATTCTTCGGACATCGCA
AAGGCAGCTTCACCGGCGCGGTGAACGACAAGGAAGGCCTGTTCCAGGCCGCCCATGGCGGCACGCTGTTTCTGGACGAG
GTGGCCGAGCTGCCACTGCACATGCAGGTCAAACTGCTGCGCGCGATCCAGGAAAAGGCCGTGCGCCCGATCGGCGGGCG
CGACGAAGTCCCGGTCGATGTGCGCATTCTCTCGGCCACGCACAAGAACCTGGCCGGACTGGTCGAACAGGGCCAGTTTC
GCCAGGATCTGTTCTACCGCATCAATGTGATCGAGCTGCGCGTACCGCCCCTTCGCGAGCGCCGCGGCGATGTGCCCTTG
CTATCCAATTTCATCCTGCGCCAGCTTGCCGCCAAAAGCGGCTCGGCACCCGGTAGCTTGATGCCTGCCGCACTGGCCTC
GCTGGAAAGTTACGACTTCCCCGGCAACGTGCGCGAACTCGAAAACATCCTTGAGCGCGCGATGGCCATGTCCGACGGCG
AAACCATTGATGTCAGCGACCTGATGCTGCCTCAGCGCAGCAGCCGTAGCGACATGCCCCCCCTGCCGCAAGCCGGCCAG
GCTGCGGCGGCAGCTCCAACGACTGCAGCGCCGACACAACATCCCGGCGACGGCGGCCTGGACGACTACATCAGCAATCT
CGAGCGCACCGCGATCATCAAGGCGCTGGAAGAATCCCGCTACAACAAGACGGCCGCGGCCAAAAAACTGGGGATTACGT
TCCGGGCATTGCGGTACAAGTTGAAGAAGCTCGGGATCGATTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (140-306)

• Response regulator receiver domain (Response_reg) (6-115)

• Bacterial regulatory protein, Fis family (HTH_8) (425-464)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	60.6	100	0.606
pilR	Acinetobacter baumannii strain A118	49.68	100	0.499