Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   KKKWG1_RS01240 Genome accession   NZ_LN869922
Coordinates   231388..231696 (-) Length   102 a.a.
NCBI ID   WP_019390394.1    Uniprot ID   -
Organism   Kingella kingae strain KWG1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 226388..236696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KKKWG1_RS01210 (KKKWG1_0253) - 227892..228374 (-) 483 WP_060536915.1 IS5/IS1182 family transposase -
  KKKWG1_RS01215 (KKKWG1_0254) - 228392..228655 (-) 264 WP_060536916.1 transposase -
  KKKWG1_RS01220 (KKKWG1_0255) - 228717..229058 (+) 342 WP_166503120.1 transposase -
  KKKWG1_RS01225 (KKKWG1_0256) - 229195..229449 (-) 255 WP_026036377.1 FAD-dependent monooxygenase -
  KKKWG1_RS01230 (KKKWG1_0257) tsf 229503..230357 (-) 855 WP_019390395.1 translation elongation factor Ts -
  KKKWG1_RS01235 (KKKWG1_0258) rpsB 230442..231167 (-) 726 WP_003788662.1 30S ribosomal protein S2 -
  KKKWG1_RS01240 (KKKWG1_0260) comE 231388..231696 (-) 309 WP_019390394.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 10831.74 Da        Isoelectric Point: 10.6245

>NTDB_id=992287 KKKWG1_RS01240 WP_019390394.1 231388..231696(-) (comE) [Kingella kingae strain KWG1]
MLKKIVLSIISLGVTTLSFAQLNINTATADELDKQLNGIGPAKAKAIVEYREKNGAFKSVDDLASVPGIKMATVNKLREQ
ATVGNVAVKPVTTKAQPITKPK

Nucleotide


Download         Length: 309 bp        

>NTDB_id=992287 KKKWG1_RS01240 WP_019390394.1 231388..231696(-) (comE) [Kingella kingae strain KWG1]
ATGTTAAAGAAAATAGTGTTGTCTATTATTTCATTAGGTGTTACCACACTAAGTTTTGCCCAATTAAATATTAATACTGC
AACGGCTGATGAATTGGATAAGCAACTCAATGGTATTGGTCCTGCCAAGGCAAAGGCGATTGTTGAATACCGTGAAAAAA
ATGGTGCATTCAAATCGGTTGATGATTTAGCTTCTGTGCCAGGTATTAAAATGGCTACGGTGAATAAGTTGCGTGAACAA
GCAACCGTGGGAAATGTTGCGGTAAAACCTGTTACAACTAAAGCACAACCCATTACGAAGCCTAAATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(21-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

53.409

86.275

0.461
  comE Neisseria gonorrhoeae MS11

53.409

86.275

0.461
  comE Neisseria gonorrhoeae MS11

53.409

86.275

0.461
  comE Neisseria gonorrhoeae MS11

53.409

86.275

0.461
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.561

80.392

0.382