Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   ACKTXI_RS26090 Genome accession   NZ_AP035884
Coordinates   5855656..5856747 (+) Length   363 a.a.
NCBI ID   WP_030078059.1    Uniprot ID   A0ABW2M812
Organism   Streptomyces sp. CMC78     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5850656..5861747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKTXI_RS26080 (SCMC78_52710) - 5852135..5853394 (+) 1260 WP_319601546.1 NAD(P)/FAD-dependent oxidoreductase -
  ACKTXI_RS26085 (SCMC78_52720) dnaG 5853488..5855416 (+) 1929 WP_398690374.1 DNA primase -
  ACKTXI_RS26090 (SCMC78_52730) rpoS 5855656..5856747 (+) 1092 WP_030078059.1 RNA polymerase sigma factor Regulator
  ACKTXI_RS26095 (SCMC78_52740) rcrQ 5856763..5858691 (-) 1929 WP_319701732.1 ABC transporter ATP-binding protein Regulator
  ACKTXI_RS26100 (SCMC78_52750) rcrP 5858691..5860424 (-) 1734 WP_319599683.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 40635.27 Da        Isoelectric Point: 6.0802

>NTDB_id=99228 ACKTXI_RS26090 WP_030078059.1 5855656..5856747(+) (rpoS) [Streptomyces sp. CMC78]
MQTRTVTTTTEPIAAIPAQHRALHHPETTAGPPGHAPEAVMVEATHLPEPPEPRNRADSGGPTSDLFRQYLREIGRIPLL
TAAEEVELARRVEAGLFAEERLAGTPDLDSRLAGDLDRLVVMGRTAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGN
LGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRLLQERGVEPTAEDIAAELDL
TPERVTEVLRLAQEPVSLHAPVGEEDDVSFGDLIEDGDAASPVESAAFLLLREHLEAVLSTLGERERKVVQLRYGLEDGR
PRTLEEIGRIFGVTRERIRQIESKTLSRLRDHAFADQLRGYLD

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=99228 ACKTXI_RS26090 WP_030078059.1 5855656..5856747(+) (rpoS) [Streptomyces sp. CMC78]
GTGCAGACCCGGACCGTGACGACCACGACCGAGCCCATCGCGGCCATCCCGGCGCAGCACAGGGCCCTGCACCACCCGGA
GACCACAGCCGGCCCGCCCGGACACGCACCCGAGGCAGTCATGGTGGAAGCGACGCATCTCCCCGAACCGCCGGAGCCAC
GGAACCGGGCGGACTCCGGCGGCCCCACCTCCGATCTGTTCCGGCAGTATCTGCGCGAGATCGGCCGCATCCCGCTGCTC
ACCGCCGCCGAGGAGGTCGAGCTCGCCCGCCGCGTCGAGGCCGGGCTCTTCGCCGAGGAACGCCTCGCGGGCACCCCCGA
CCTCGACTCCCGCCTCGCCGGGGACCTGGACCGGCTGGTGGTGATGGGCCGCACCGCCAAGCGCCGCCTCATCGAGGCCA
ACCTCCGCCTCGTCGTCTCCGTCGCCAAGCGCTATGTGGGCCGCGGGCTGACCATGCTCGACCTGGTCCAGGAGGGCAAC
CTCGGGCTGATCCGGGCGGTGGAGAAGTTCGACTACGCCCGGGGCTACAAGTTCTCCACGTACGCCACCTGGTGGATCCG
CCAGGCCATGTCCCGCGCGCTGGCCGACCAGGCCCGCACCATCCGCGTCCCGGTCCACGTAGTGGAGCTGATCAACCGCG
TCGTCCGGGTCCAGCGCCGGCTCCTCCAGGAACGCGGCGTCGAGCCGACCGCCGAGGACATCGCCGCGGAGCTGGACCTG
ACGCCCGAGCGGGTCACCGAAGTCCTCCGCCTGGCCCAGGAACCCGTCTCGCTGCACGCCCCCGTCGGCGAGGAGGACGA
CGTCTCCTTCGGCGACCTCATCGAGGACGGCGACGCCGCCTCACCCGTCGAGTCCGCCGCCTTCCTGCTGCTGCGCGAGC
ACCTGGAGGCGGTCCTCTCCACCCTCGGCGAACGCGAACGCAAGGTCGTGCAACTGCGGTACGGCCTGGAGGACGGGCGG
CCCCGCACCCTGGAGGAGATCGGCCGGATCTTCGGCGTGACACGCGAACGCATCCGCCAGATCGAGTCCAAGACCCTCAG
CAGGCTGCGGGACCACGCCTTCGCCGACCAGCTCCGCGGCTATCTCGACTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(130-199)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(65-98)

Sigma-70, region 4 (Sigma70_r4)

(298-350)

Sigma-70 region 3 (Sigma70_r3)

(209-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

41.787

95.592

0.399

Multiple sequence alignment