Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACKTXI_RS26095 Genome accession   NZ_AP035884
Coordinates   5856763..5858691 (-) Length   642 a.a.
NCBI ID   WP_319701732.1    Uniprot ID   -
Organism   Streptomyces sp. CMC78     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5851763..5863691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKTXI_RS26080 (SCMC78_52710) - 5852135..5853394 (+) 1260 WP_319601546.1 NAD(P)/FAD-dependent oxidoreductase -
  ACKTXI_RS26085 (SCMC78_52720) dnaG 5853488..5855416 (+) 1929 WP_398690374.1 DNA primase -
  ACKTXI_RS26090 (SCMC78_52730) rpoS 5855656..5856747 (+) 1092 WP_030078059.1 RNA polymerase sigma factor Regulator
  ACKTXI_RS26095 (SCMC78_52740) rcrQ 5856763..5858691 (-) 1929 WP_319701732.1 ABC transporter ATP-binding protein Regulator
  ACKTXI_RS26100 (SCMC78_52750) rcrP 5858691..5860424 (-) 1734 WP_319599683.1 ABC transporter ATP-binding protein Regulator
  ACKTXI_RS26105 (SCMC78_52760) - 5860603..5862054 (-) 1452 WP_030078065.1 FGGY family carbohydrate kinase -
  ACKTXI_RS26110 (SCMC78_52770) - 5862122..5862430 (-) 309 WP_030078067.1 hypothetical protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69284.54 Da        Isoelectric Point: 5.0038

>NTDB_id=99229 ACKTXI_RS26095 WP_319701732.1 5856763..5858691(-) (rcrQ) [Streptomyces sp. CMC78]
MAGPGGRMMAGGAPTDRSMDFKGSSKRLLKRFGREKTSLWLMLGAVAVSVGLSVAGPKILGRATDLIFAGVIGREMPEGS
TKAQAIEGLREEGRGSMADMLSGVGFTPGEGIDFAAVGNVLLLALAVYVGAGLLMLVATRLSIRVINRIVFQLREDLQTK
LARLPLSYFDRSKRGEVLSRATNDIDNISQTLQQTMGQLINSLLTIVGVLVVMFWISPLLALVALVTVPLSVVVATQVGK
RSQPQFVQQWRVTGTLNAHVEEMYTGHNLVKVFGRQQESARDFAEQNEALYEAGFKAQFASGLMQPLMFFISNLNYVLVA
VVGGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGIASAERVFELLDAEEQEADPEHGERPERPAGRVSLE
KVSFRYEPEKPLIEDLSLSVEPGQTVAIVGPTGAGKTTLVNLLMRFYEVTGGRIALDGVDVAKMSRDDLRSSIGMVLQDT
WLFGGTIAENIAYGASREVTREEIEEAARAAHADRFIRTLPDGYDSVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMESGSIVEQGTHEELLAAGGAYARLYAAQFAEALAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=99229 ACKTXI_RS26095 WP_319701732.1 5856763..5858691(-) (rcrQ) [Streptomyces sp. CMC78]
ATGGCCGGTCCGGGCGGACGGATGATGGCCGGGGGCGCGCCCACCGACCGGTCGATGGATTTCAAGGGGTCGAGCAAGCG
GCTGCTGAAGCGGTTCGGCCGGGAGAAGACCTCGCTCTGGCTGATGCTGGGCGCGGTGGCGGTGAGCGTCGGCCTCTCGG
TGGCCGGGCCGAAGATCCTCGGCAGGGCGACCGACCTGATCTTCGCCGGTGTCATCGGGCGGGAGATGCCCGAGGGCTCG
ACGAAGGCGCAGGCGATCGAGGGGCTGCGCGAGGAGGGCCGCGGCTCGATGGCCGACATGCTCTCGGGGGTGGGCTTCAC
CCCGGGCGAGGGCATCGACTTCGCGGCGGTGGGGAACGTCCTGCTGCTGGCCCTGGCGGTCTATGTCGGGGCCGGGCTGC
TGATGCTGGTGGCGACGCGGCTGTCGATCCGGGTGATCAACCGGATCGTGTTCCAGTTGCGTGAGGACCTCCAGACGAAG
CTGGCGCGGCTGCCGCTGTCGTACTTCGACCGGTCCAAGCGCGGTGAGGTGCTGAGCCGGGCGACGAACGACATCGACAA
CATCTCGCAGACGCTCCAGCAGACGATGGGCCAGCTCATCAACTCGCTGCTGACCATCGTCGGCGTGCTGGTCGTGATGT
TCTGGATCTCGCCGCTGCTGGCGCTGGTCGCGCTGGTGACGGTTCCGCTGTCGGTGGTCGTGGCGACGCAGGTCGGCAAG
CGGTCGCAGCCGCAGTTCGTGCAGCAGTGGCGGGTGACGGGCACGCTCAACGCCCATGTCGAGGAGATGTACACCGGGCA
CAACCTGGTGAAGGTCTTCGGCCGGCAGCAGGAGTCCGCGCGGGACTTCGCCGAGCAGAACGAGGCGCTGTACGAGGCGG
GCTTCAAGGCCCAGTTCGCCAGCGGGCTCATGCAGCCGCTGATGTTCTTCATCTCCAACCTCAACTATGTGCTGGTCGCG
GTGGTCGGCGGGCTCCGGGTCGCCTCGGGCACGCTGTCGATCGGTGACGTCCAGGCGTTCATCCAGTACTCGCGGCAGTT
CTCGATGCCGCTGACGCAGGTCGCCTCGATGGCCAACCTCGTCCAGTCCGGCATCGCGTCCGCGGAGCGGGTCTTCGAGC
TGCTGGACGCCGAGGAGCAGGAGGCGGATCCGGAGCACGGTGAGCGCCCGGAGCGGCCGGCCGGCCGGGTCTCGCTGGAG
AAGGTGTCCTTCCGCTACGAGCCGGAGAAGCCGCTGATCGAGGATCTGTCGCTGAGCGTGGAGCCGGGGCAGACCGTCGC
GATCGTCGGTCCGACCGGGGCGGGCAAGACGACGCTGGTCAATCTGCTGATGCGGTTCTACGAGGTGACCGGCGGGCGGA
TCGCGCTCGACGGGGTCGATGTGGCGAAGATGTCCCGGGACGATCTGCGGTCCTCGATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGGACGATCGCGGAGAACATCGCGTACGGCGCTTCGCGCGAGGTCACCCGGGAGGAGATCGAGGAGGC
GGCCCGGGCGGCGCATGCCGACCGGTTCATCCGGACGCTGCCCGACGGGTACGACTCGGTGATCGACGACGAGGGCACCG
GGGTCAGCGCGGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTGCTCGACGAG
GCGACCAGTTCGGTGGACACCCGGACCGAGGTGCTGATCCAGAAGGCGATGGCGCGCCTGGCCCACGGGCGTACGTCGTT
CGTGATCGCGCACCGGCTCTCCACGATCCGGGACGCGGACGTGATCCTGGTGATGGAGAGCGGCTCGATCGTCGAGCAGG
GCACGCACGAGGAGCTGTTGGCGGCCGGTGGGGCCTATGCCCGGCTGTACGCCGCCCAGTTCGCGGAGGCGCTGGCCGAG
GTGGACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(41-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

44.318

82.243

0.364

Multiple sequence alignment