Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ACKTXI_RS26100 Genome accession   NZ_AP035884
Coordinates   5858691..5860424 (-) Length   577 a.a.
NCBI ID   WP_319599683.1    Uniprot ID   -
Organism   Streptomyces sp. CMC78     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5853691..5865424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACKTXI_RS26090 (SCMC78_52730) rpoS 5855656..5856747 (+) 1092 WP_030078059.1 RNA polymerase sigma factor Regulator
  ACKTXI_RS26095 (SCMC78_52740) rcrQ 5856763..5858691 (-) 1929 WP_319701732.1 ABC transporter ATP-binding protein Regulator
  ACKTXI_RS26100 (SCMC78_52750) rcrP 5858691..5860424 (-) 1734 WP_319599683.1 ABC transporter ATP-binding protein Regulator
  ACKTXI_RS26105 (SCMC78_52760) - 5860603..5862054 (-) 1452 WP_030078065.1 FGGY family carbohydrate kinase -
  ACKTXI_RS26110 (SCMC78_52770) - 5862122..5862430 (-) 309 WP_030078067.1 hypothetical protein -
  ACKTXI_RS26130 (SCMC78_52780) - 5863176..5864669 (-) 1494 WP_408054337.1 DHA2 family efflux MFS transporter permease subunit -
  ACKTXI_RS26135 (SCMC78_52790) - 5864771..5865400 (+) 630 WP_319599685.1 TetR/AcrR family transcriptional regulator C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62322.36 Da        Isoelectric Point: 5.2566

>NTDB_id=99230 ACKTXI_RS26100 WP_319599683.1 5858691..5860424(-) (rcrP) [Streptomyces sp. CMC78]
MLIKLLRAHLGPYKKPIVLLVFLQLLQTCATLYLPSLNADIIDNGVVTGDTGYILEFGGLMIAVSVLQVLCNVGAVYYGA
RTASALGRDVRAAVFDRVQSFSARELGRFGAPSLITRTTNDVQQVQMVVLLAFTLMVSAPIMCVGGIVMALGLDVPLSAV
LLAVVPVLGVSVGLIVRKMGPLFRTMQERLDGVNRVLREQITGNRVIRAFVRDGYEEKRFRGANTELTDVSVATGRLMAL
MFPTVMTVVNLSSVAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIEEVLGTESSVVP
PVAPVTELRRHGHLEVRGAEFRYPGAEEPVLRNVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDVTDGEVLVDGEDVR
TLDPVLLSKTVSLVPQKPYLFSGTVATNLRYGNPDASDEELWHALEVAQAKEFVEALEHGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALGRETAGATVVIVAQRVSTIRDADRILVLDEGRLVGSGTHHELMEGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=99230 ACKTXI_RS26100 WP_319599683.1 5858691..5860424(-) (rcrP) [Streptomyces sp. CMC78]
GTGCTCATAAAACTCCTGCGGGCCCACCTGGGCCCGTACAAGAAACCCATCGTGCTGCTGGTCTTTCTCCAGCTGCTCCA
GACCTGCGCCACCCTGTATCTGCCCAGCCTGAACGCCGACATCATCGACAACGGTGTCGTCACCGGTGACACCGGCTACA
TCCTGGAGTTCGGCGGTCTCATGATCGCCGTCAGCGTTCTGCAGGTCCTCTGCAATGTGGGGGCCGTCTATTACGGGGCG
CGTACCGCCTCCGCTCTCGGGCGTGACGTGCGGGCCGCCGTCTTCGACCGGGTGCAGTCCTTCTCCGCCCGTGAGCTGGG
CCGGTTCGGGGCGCCCTCGCTGATCACCCGGACCACCAACGACGTCCAGCAGGTCCAGATGGTGGTGCTGCTGGCGTTCA
CGCTGATGGTGTCGGCCCCGATCATGTGCGTCGGCGGCATCGTCATGGCGCTCGGCCTGGATGTGCCGCTCTCCGCCGTG
CTGCTGGCGGTCGTGCCGGTGCTCGGGGTCTCGGTCGGTCTCATCGTGCGGAAGATGGGGCCGCTGTTCCGCACCATGCA
GGAGCGGCTGGACGGCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGCGCCTTCGTCCGGGACG
GGTACGAGGAGAAGCGGTTCCGGGGTGCGAACACCGAGCTGACCGATGTGTCGGTGGCGACCGGGCGGCTGATGGCGCTG
ATGTTCCCGACCGTGATGACGGTGGTCAACCTGTCGTCGGTCGCGGTGGTGTGGTTCGGCGCGCACCGGATCGACAGCGG
CGGGATGCAGATCGGTGCGCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGCATCGAGGAGGTCCTCGGGACCGAGTCGAGCGTCGTGCCG
CCCGTCGCGCCCGTCACCGAGCTGCGGCGGCACGGGCATCTGGAGGTGCGGGGCGCGGAGTTCCGGTATCCGGGTGCGGA
GGAGCCGGTGCTGCGGAACGTGGATCTGGTGGCCCGGCCCGGTGAGACGACGGCGGTCATCGGGTCGACGGGCAGCGGGA
AGTCCACGCTGCTCGGGCTCGTACCCCGGCTGTTCGATGTGACGGACGGCGAGGTGCTGGTCGACGGCGAGGACGTGCGG
ACGCTGGATCCGGTGCTGCTGTCGAAGACGGTGTCGCTGGTGCCGCAGAAGCCGTACCTCTTCTCGGGGACGGTGGCGAC
GAACCTGCGGTACGGGAACCCGGACGCGAGCGACGAAGAGCTGTGGCACGCGCTGGAGGTGGCACAGGCGAAGGAGTTCG
TGGAGGCCCTGGAGCACGGGCTGGACGCGCCGATCGCGCAGGGCGGCACCAATGTGTCGGGCGGTCAGCGGCAGCGGCTC
GCCATCGCGCGGACGCTGGTGCAGCGCCCGGAGATCTATCTGTTCGACGACTCGTTCTCCGCGCTGGACTACGCGACCGA
CGCGGCGCTGCGGGCGGCGCTGGGCCGGGAGACGGCCGGGGCGACCGTGGTGATCGTGGCGCAGCGGGTGTCCACCATCC
GTGACGCGGACCGGATCCTGGTGCTGGACGAGGGCCGGCTCGTGGGGTCCGGGACCCATCACGAGCTGATGGAAGGCAAT
GAAACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.451

100

0.399

Multiple sequence alignment