Detailed information NTG0099227

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LA521A_RS03820
• Genome accession: NZ_AP027041
• Coordinates: 864181..865635 (-)
• Length: 484 a.a.
• NCBI ID: WP_281781048.1
• Uniprot ID: -
• Organism: Lysobacter auxotrophicus strain 5-21a
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 859181..870635

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LA521A_RS03810 (LA521A_07600)	-	860123..863167 (-)	3045	WP_281781046.1	fused MFS/spermidine synthase	-
LA521A_RS03815 (LA521A_07610)	-	863266..863703 (-)	438	WP_281781047.1	pilin	-
LA521A_RS03820 (LA521A_07620)	pilR	864181..865635 (-)	1455	WP_281781048.1	sigma-54 dependent transcriptional regulator	Regulator
LA521A_RS03825 (LA521A_07630)	-	865719..867344 (-)	1626	WP_281781049.1	ATP-binding protein	-
LA521A_RS03830 (LA521A_07640)	sucC	867563..868729 (+)	1167	WP_281781050.1	ADP-forming succinate--CoA ligase subunit beta	-
LA521A_RS03835 (LA521A_07650)	sucD	868744..869619 (+)	876	WP_115841436.1	succinate--CoA ligase subunit alpha	-
LA521A_RS03840	-	869903..870241 (+)	339	Protein_764	endonuclease domain-containing protein	-

Sequence

Protein

• Length: 484 a.a.
• Molecular weight: 52047.65 Da
• Isoelectric Point: 6.8485

>NTDB_id=99227 LA521A_RS03820 WP_281781048.1 864181..865635(-) (pilR) [Lysobacter auxotrophicus strain 5-21a]
MAETRSALVVDDERDIRELLVMTLGRMGLRCDTASTLGEARGQLARNRYDLCLTDMRLPDGSGMDLVAEISQKHPETPVA
MITAFGNVEAAVEALKAGAFDFVAKPVDLAVLRDLVRHALDLNERRKSAPPADAVAARLYGQSPAMAQLRGTIAKVARSQ
APVYIVGESGVGKELVARTIHAEGARSTGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQSADGGTLFLDEI
AELPLAMQVKLLRAIQEKSIRPVGANAEVPVDVRILSATHKDLAALVADGRFRQDLYYRINVIELRVPPLRERQDDLPGL
AEKVLARLSLAQGRVFPPTLSADALDTLRAYAFPGNVRELENILERALALAEGDSLTAEDLRLPKPANAPAVPSNGHTGA
ATAPANPASPPLVVPGQPTQAIDPRTLNPRDTASSPLPSYIEEIERAAIQQALQENRYNKTRTAAALGITFRALRYKLKK
LGID

Nucleotide

• Length: 1455 bp

>NTDB_id=99227 LA521A_RS03820 WP_281781048.1 864181..865635(-) (pilR) [Lysobacter auxotrophicus strain 5-21a]
ATGGCCGAAACACGTAGTGCATTGGTGGTCGACGACGAACGCGACATCCGCGAACTGCTCGTCATGACCTTGGGCCGCAT
GGGCCTTCGATGCGACACCGCCTCCACGCTCGGCGAAGCCCGCGGCCAGCTCGCGCGCAATCGCTATGACCTGTGCCTGA
CGGACATGCGCCTGCCCGACGGCTCGGGCATGGACCTGGTGGCCGAGATCAGCCAGAAGCATCCGGAAACGCCGGTCGCG
ATGATCACCGCCTTCGGCAACGTCGAAGCCGCGGTGGAAGCGCTGAAGGCCGGCGCCTTCGACTTCGTCGCCAAACCCGT
GGACCTGGCCGTGCTGCGCGATCTCGTGCGCCACGCACTGGACCTCAACGAACGCCGCAAGAGCGCGCCGCCGGCCGACG
CCGTGGCCGCGCGCCTGTACGGCCAGTCGCCGGCGATGGCACAGCTTCGCGGCACCATCGCGAAGGTCGCCCGCAGCCAG
GCGCCGGTGTACATCGTCGGCGAGTCGGGCGTGGGCAAGGAGCTCGTCGCCCGCACCATCCATGCCGAAGGCGCGCGATC
GACCGGGCCGTTCGTGCCGGTGAACTGCGGCGCGATCCCCGCCGAGCTGATGGAAAGCGAGTTCTTCGGCCACAAGAAGG
GCAGCTTCACCGGCGCGCATGCCGACAAGCCGGGCCTGTTCCAGAGCGCCGACGGCGGCACGCTGTTCCTCGACGAAATC
GCCGAGCTTCCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGTCGATCCGCCCGGTCGGCGCGAATGC
CGAAGTGCCGGTGGACGTGCGCATCCTCTCGGCCACGCACAAGGACCTCGCAGCGCTGGTCGCCGACGGCCGCTTCCGCC
AGGACCTTTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCCAGGACGATCTGCCGGGACTC
GCCGAGAAGGTGCTCGCGCGCCTCTCGCTCGCGCAGGGTCGTGTGTTCCCGCCGACGCTCAGCGCGGACGCGCTCGACAC
GCTGCGCGCGTACGCCTTCCCGGGCAACGTGCGCGAGCTGGAGAACATCCTCGAACGCGCGCTCGCCCTTGCGGAAGGCG
ACAGCCTGACCGCCGAGGACCTGCGCCTGCCGAAGCCGGCGAACGCGCCCGCCGTACCATCGAATGGCCACACGGGTGCG
GCCACCGCACCGGCGAATCCTGCATCGCCGCCGCTGGTGGTGCCCGGTCAGCCGACGCAGGCGATCGATCCGCGCACGCT
CAACCCGCGTGACACCGCCAGCAGCCCCCTGCCCTCGTACATCGAGGAAATCGAACGCGCGGCGATCCAGCAGGCGCTGC
AGGAAAACCGCTACAACAAGACGCGCACCGCGGCGGCACTGGGCATCACCTTCCGTGCGTTGCGGTACAAGCTGAAGAAG
CTGGGCATCGATTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (140-305)

• Response regulator receiver domain (Response_reg) (8-116)

• Bacterial regulatory protein, Fis family (HTH_8) (441-481)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	59.667	99.38	0.593
pilR	Acinetobacter baumannii strain A118	47.423	100	0.475