Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   AT689_RS06465 Genome accession   NZ_LN831051
Coordinates   1203991..1204713 (+) Length   240 a.a.
NCBI ID   WP_001010372.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain NCTC7465     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1198991..1209713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT689_RS06445 (ERS445053_01256) - 1199076..1200698 (+) 1623 WP_000017793.1 polysaccharide biosynthesis protein -
  AT689_RS06450 (ERS445053_01257) amiA 1200901..1202859 (+) 1959 WP_000748884.1 peptide ABC transporter substrate-binding protein Regulator
  AT689_RS13440 - 1203031..1203966 (+) 936 Protein_1209 ABC transporter ATP-binding protein -
  AT689_RS06465 (ERS445053_01260) rcrP 1203991..1204713 (+) 723 WP_001010372.1 ABC transporter ATP-binding protein Regulator
  AT689_RS06470 (ERS445053_01261) - 1204871..1205965 (+) 1095 WP_000031966.1 cystathionine gamma-synthase -
  AT689_RS06475 (ERS445053_01262) - 1205973..1207139 (+) 1167 WP_000521365.1 MalY/PatB family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27137.99 Da        Isoelectric Point: 5.0452

>NTDB_id=991799 AT689_RS06465 WP_001010372.1 1203991..1204713(+) (rcrP) [Streptococcus pneumoniae strain NCTC7465]
MNFNHVYFGYDENRPVLKDITCSIFKGQKIAFVGPSGSGKSTIVRLLERFYKPLSGDILMEQSSIYDFNLKEWRSKIAWV
SQNNAVLSGSIRDNLCLGLNRLVTDDELMKVLDLVSLGDEIRSMKEGLDTEVGERGRLLSGGQSQRLQIARAYLKDAEIL
IFDEATANLDADSEYAIISSLYSVLKEKTVVIIAHRLSTVKDVDCIFFLEEGKITGSGTHKELLENHERYARFVQEQMIE

Nucleotide


Download         Length: 723 bp        

>NTDB_id=991799 AT689_RS06465 WP_001010372.1 1203991..1204713(+) (rcrP) [Streptococcus pneumoniae strain NCTC7465]
TTGAATTTTAACCATGTCTATTTTGGTTATGATGAAAATCGACCTGTCTTAAAGGATATTACTTGTTCAATTTTCAAGGG
GCAAAAAATTGCTTTTGTTGGACCATCTGGATCAGGAAAATCAACGATTGTGCGTTTGTTAGAGCGGTTTTATAAACCGC
TTTCAGGAGATATTCTAATGGAGCAATCAAGTATATATGATTTTAACTTAAAAGAATGGAGAAGTAAAATCGCTTGGGTT
TCACAAAATAATGCAGTCTTATCTGGCAGTATTCGTGACAATCTTTGTCTCGGTTTGAATCGCTTAGTAACTGATGATGA
ATTGATGAAAGTGCTAGACTTAGTATCACTAGGTGATGAGATTCGCTCCATGAAAGAGGGACTAGATACTGAAGTTGGTG
AACGCGGACGACTCTTGTCAGGGGGGCAAAGCCAAAGACTTCAAATAGCTAGAGCCTACTTAAAAGATGCTGAAATTCTT
ATATTTGATGAAGCCACTGCTAATCTTGATGCGGATTCTGAGTATGCGATTATCAGTAGCCTCTATTCTGTATTAAAGGA
GAAGACGGTTGTGATTATAGCGCATCGTTTGTCAACGGTAAAAGATGTGGATTGTATTTTCTTCTTAGAGGAGGGGAAAA
TCACTGGCTCAGGAACTCATAAGGAACTACTGGAAAATCATGAGCGTTATGCTCGTTTTGTGCAGGAGCAAATGATAGAG
TGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

37.238

99.583

0.371
  rcrQ Streptococcus mutans UA159

36.667

100

0.367
  comA Streptococcus mitis SK321

37.607

97.5

0.367
  comA/nlmT Streptococcus mutans UA159

37.826

95.833

0.362
  comA Streptococcus mitis NCTC 12261

37.179

97.5

0.362