NTDB

Overview

Name	ruvA	Type	Machinery gene
Locus tag	VV28_RS14335	Genome accession	NZ_LN680001
Coordinates	2854176..2854781 (-)	Length	201 a.a.
NCBI ID	WP_003229717.1	Uniprot ID	O05392
Organism	Bacillus subtilis strain BS34A
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2849176..2859781

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VV28_RS14305 (BS34A_30220)	-	2849989..2850378 (+)	390	WP_004398667.1	TIGR04086 family membrane protein	-
VV28_RS14310 (BS34A_30230)	yajC	2850435..2850701 (-)	267	WP_004398708.1	preprotein translocase subunit YajC	-
VV28_RS14315 (BS34A_30240)	tgt	2850738..2851883 (-)	1146	WP_003229725.1	tRNA guanosine(34) transglycosylase Tgt	-
VV28_RS14320 (BS34A_30250)	queA	2851910..2852938 (-)	1029	WP_003229723.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
VV28_RS14325 (BS34A_30260)	yrzS	2852968..2853168 (-)	201	WP_003222669.1	DUF2905 domain-containing protein	-
VV28_RS14330 (BS34A_30270)	ruvB	2853161..2854165 (-)	1005	WP_003229718.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
VV28_RS14335 (BS34A_30280)	ruvA	2854176..2854781 (-)	606	WP_003229717.1	Holliday junction branch migration protein RuvA	Machinery gene
VV28_RS14340 (BS34A_30290)	bofC	2854920..2855432 (-)	513	WP_003229715.1	sporulation cell-cell signaling protein BofC	-
VV28_RS14345 (BS34A_30300)	csbX	2855480..2856787 (-)	1308	WP_003246197.1	MFS transporter	-
VV28_RS14350 (BS34A_30310)	iolG	2856858..2857883 (-)	1026	WP_004398990.1	inositol 2-dehydrogenase	-
VV28_RS14355 (BS34A_30320)	yrzF	2858121..2858768 (+)	648	WP_003246159.1	phosphotransferase	-
VV28_RS22535 (BS34A_30330)	-	2858814..2858936 (-)	123	WP_003229707.1	hypothetical protein	-
VV28_RS22540 (BS34A_30340)	yrzH	2859021..2859311 (+)	291	WP_003246047.1	DUF5412 family protein	-
VV28_RS21995	-	2859318..2859458 (+)	141	WP_004398683.1	hypothetical protein	-

Sequence

Protein

Download Length: 201 a.a. Molecular weight: 22584.08 Da Isoelectric Point: 5.4072

                                >NTDB_id=991282 VV28_RS14335 WP_003229717.1 2854176..2854781(-) (ruvA) [Bacillus subtilis strain BS34A]

MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIYKERSQETIFTYHHIREDAFSLYGFSTREEKALFTKLLNVTGIGP

KGALAILGSGDPGAVIQAIENEDEAFLVKFPGVGKKTARQIILDLKGKLADVVPEMIENLFNHEERLEKQTAETALEEAL

EALRVLGYAEKEIKKVLPHLKEEIGLTTDQYVKKALQKLLK

Nucleotide

Download Length: 606 bp

                                >NTDB_id=991282 VV28_RS14335 WP_003229717.1 2854176..2854781(-) (ruvA) [Bacillus subtilis strain BS34A]

GTGATTGAATTTGTTAAAGGGACGATTGATTATGTATCTCCCCAATATATTGTCATAGAGAACGGCGGCATCGGCTATCA

GATTTTCACGCCGAATCCGTTTATATATAAGGAGAGAAGCCAAGAAACGATTTTTACATACCATCATATCAGAGAGGATG

CTTTTTCGCTTTATGGTTTTTCAACAAGAGAGGAGAAGGCGCTCTTTACAAAGCTGTTAAACGTGACCGGAATTGGCCCG

AAAGGAGCACTTGCCATCTTGGGCTCGGGTGATCCCGGAGCGGTCATCCAAGCAATTGAAAATGAAGATGAAGCTTTTTT

GGTCAAGTTTCCTGGAGTAGGAAAGAAAACCGCACGCCAGATTATTCTAGATTTAAAAGGAAAGCTGGCAGATGTTGTGC

CTGAAATGATTGAAAATCTGTTTAATCATGAAGAAAGGCTTGAAAAGCAAACAGCGGAAACGGCTCTTGAAGAAGCACTT

GAAGCCCTCAGGGTTCTCGGATATGCTGAAAAAGAAATCAAAAAGGTGCTTCCTCACCTTAAAGAAGAAATTGGGCTGAC

AACAGACCAATATGTGAAAAAAGCATTACAAAAACTATTAAAGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(155-199)

RuvA N terminal domain (RuvA_N)

(1-59)

Helix-hairpin-helix domain (HHH_5)

(69-126)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	O05392

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	100	100	1
ruvA	Streptococcus pneumoniae TIGR4	39.806	100	0.408
ruvA	Streptococcus pneumoniae R6	39.806	100	0.408
ruvA	Streptococcus pneumoniae D39	39.806	100	0.408

Detailed information NTG0991282