Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SP4011_RS07585 Genome accession   NZ_AP026968
Coordinates   1462812..1464779 (-) Length   655 a.a.
NCBI ID   WP_120007864.1    Uniprot ID   -
Organism   Streptococcus parapneumoniae strain SP4011     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1457812..1469779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP4011_RS07545 (SP4011_14460) - 1457923..1458420 (-) 498 WP_120007857.1 GAF domain-containing protein -
  SP4011_RS07550 (SP4011_14470) rpsA 1458506..1459708 (-) 1203 WP_338618602.1 30S ribosomal protein S1 -
  SP4011_RS07565 (SP4011_14480) - 1460081..1460311 (-) 231 WP_000037113.1 DUF2969 domain-containing protein -
  SP4011_RS07570 (SP4011_14490) pcp 1460479..1461123 (-) 645 WP_000699369.1 pyroglutamyl-peptidase I -
  SP4011_RS07575 (SP4011_14500) - 1461138..1462061 (-) 924 WP_120007861.1 DUF979 domain-containing protein -
  SP4011_RS07580 (SP4011_14510) - 1462058..1462747 (-) 690 WP_057487179.1 DUF969 domain-containing protein -
  SP4011_RS07585 (SP4011_14520) amiA3 1462812..1464779 (-) 1968 WP_120007864.1 peptide ABC transporter substrate-binding protein Regulator
  SP4011_RS07590 (SP4011_14530) - 1464802..1465824 (-) 1023 WP_218757600.1 branched-chain amino acid aminotransferase -
  SP4011_RS07595 (SP4011_14540) parC 1465959..1468430 (-) 2472 WP_338618613.1 DNA topoisomerase IV subunit A -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72723.33 Da        Isoelectric Point: 5.1344

>NTDB_id=99124 SP4011_RS07585 WP_120007864.1 1462812..1464779(-) (amiA3) [Streptococcus parapneumoniae strain SP4011]
MKSKKWLLTAGVVLSTTALLAACGKADKEADAPTTFSYVYAVDPASLDYSIATRTSTTDIIGNVVDGLMENDKYGNVIPS
LAEDWSVSKDGLTYTYKLRKGVKWYTSEGEEYAEVTAHDFVTGLKHVADGKSDGVSLIQNSIKGLDAYMTGETNDFSTVG
VKALDDYTVEYTLNAPESFWNSKVTTATMLPVNEEFLKASGKNYGEVSPAGILYNGPYFLKTLTSKSLIEYEKNPNYWDK
ENVKIEKIKLTYYDGSDQESLIRSFSSGAYTTARLFPSSSNFASTLEEYGDKITYSPQDSSSYYFTFNVNRQSYNKTAKT
SEEQKTSTKEAMLNKDFRQAINFAFNRHSYAAQLNGEDGADKIIRNSLVPDNFVQAGGKNFGQIAQAELVNYGDQWKGVE
LVDGKDSIYNPDKAKAAFEKAKKDLESKGVTFPIHLDVPVEQTDTIAVQQSNSFKQSIESTLGAENVVIDVLQMTDNEKE
TITSQARVPSQKDYDLNSTGWAPSYQDPASYLNIMDPKSGSAMKHLGITKGKDKDVVAKLGLDQYKKLLEDAVSETTDLE
KRYEKYAKAQAWLTDSSLLMPTASSGGSPVVSNVVPFSKPYSQVGIKGDPYIFKGMKLQKDIVTTKEYDEALKKWQKEKL
ESNSKYQKELEKHIK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=99124 SP4011_RS07585 WP_120007864.1 1462812..1464779(-) (amiA3) [Streptococcus parapneumoniae strain SP4011]
ATGAAATCGAAAAAGTGGCTCTTAACAGCAGGAGTGGTCCTGAGCACAACAGCTCTTTTAGCAGCCTGTGGAAAAGCTGA
TAAAGAAGCAGATGCTCCGACAACATTTTCTTATGTCTATGCAGTGGATCCAGCATCCTTGGACTACAGCATAGCAACGC
GTACATCCACAACAGATATTATCGGGAATGTCGTTGATGGTTTGATGGAAAATGATAAATATGGTAATGTTATTCCTTCT
TTGGCTGAAGATTGGTCCGTGTCAAAAGATGGTCTGACTTATACCTATAAACTTCGTAAAGGAGTGAAATGGTACACTTC
TGAAGGTGAAGAATACGCAGAAGTAACAGCCCATGACTTTGTAACAGGATTGAAACACGTTGCTGACGGTAAGTCAGACG
GTGTCTCTCTCATCCAAAATTCAATCAAAGGCTTGGACGCCTATATGACTGGTGAAACCAATGATTTCTCTACAGTTGGT
GTTAAAGCTTTGGATGACTACACAGTTGAGTATACATTGAATGCGCCAGAAAGTTTCTGGAATTCAAAAGTGACTACAGC
GACGATGTTGCCTGTAAATGAAGAGTTTTTAAAGGCATCAGGAAAGAATTACGGAGAGGTTAGCCCAGCAGGTATTCTCT
ACAATGGTCCTTATTTCTTAAAAACATTGACTTCTAAATCTTTGATTGAATATGAAAAAAATCCAAATTACTGGGATAAA
GAAAATGTTAAAATTGAGAAGATTAAATTGACCTACTACGATGGTTCAGATCAGGAGTCTTTGATCCGTAGCTTCTCCTC
TGGTGCTTATACGACAGCCCGTCTCTTCCCAAGCAGCTCAAACTTTGCTTCAACTTTGGAAGAATACGGAGATAAAATCA
CTTATAGCCCACAGGACTCAAGCAGTTATTACTTCACCTTTAACGTAAATCGTCAGTCATACAATAAAACTGCGAAAACA
AGCGAAGAGCAAAAGACTTCTACAAAAGAAGCGATGCTCAATAAGGACTTCCGTCAGGCTATCAACTTTGCCTTCAACCG
TCATTCGTATGCTGCCCAGCTAAACGGTGAAGATGGTGCGGACAAGATTATTCGTAACAGCCTTGTTCCAGATAACTTCG
TACAAGCAGGTGGTAAGAACTTTGGTCAAATCGCCCAAGCAGAGTTGGTGAACTATGGTGACCAATGGAAAGGTGTTGAG
CTAGTTGACGGTAAGGATTCTATCTACAACCCTGACAAGGCTAAAGCTGCTTTCGAAAAAGCTAAGAAAGACTTGGAATC
TAAAGGGGTAACCTTCCCAATTCACTTGGATGTCCCGGTTGAACAAACAGATACTATCGCCGTTCAACAAAGCAACTCTT
TCAAACAGTCTATTGAATCAACTCTTGGTGCTGAAAATGTTGTCATCGATGTACTTCAAATGACAGATAATGAAAAAGAA
ACGATTACATCACAAGCGCGTGTTCCTTCTCAAAAAGACTATGATTTGAACAGTACAGGATGGGCTCCAAGCTATCAAGA
TCCAGCATCTTACTTGAATATTATGGATCCAAAATCTGGTTCTGCCATGAAACACCTTGGTATTACGAAAGGAAAAGATA
AGGATGTTGTCGCTAAACTTGGTTTGGATCAATATAAGAAATTGTTAGAAGATGCTGTTTCTGAGACCACTGACTTAGAG
AAGAGATATGAAAAATATGCCAAAGCTCAAGCTTGGTTGACAGATAGTTCATTATTGATGCCAACAGCCTCATCTGGTGG
TTCTCCAGTTGTAAGTAACGTAGTACCATTCTCAAAACCATACTCACAAGTTGGTATTAAGGGGGATCCATATATCTTTA
AAGGAATGAAATTGCAAAAAGATATTGTTACAACAAAAGAATATGACGAAGCTCTTAAAAAATGGCAAAAAGAAAAATTG
GAATCCAATAGCAAATATCAAAAAGAACTAGAAAAACACATTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

52.879

100

0.533
  amiA3 Streptococcus thermophilus LMG 18311

52.273

100

0.527
  amiA Streptococcus salivarius strain HSISS4

52.28

100

0.525

Multiple sequence alignment