Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   SP4011_RS05275 Genome accession   NZ_AP026968
Coordinates   1023089..1023898 (+) Length   269 a.a.
NCBI ID   WP_000004964.1    Uniprot ID   A0A1F0AUQ8
Organism   Streptococcus parapneumoniae strain SP4011     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1018089..1028898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP4011_RS05260 (SP4011_09660) mutY 1019810..1020985 (+) 1176 WP_338620200.1 A/G-specific adenine glycosylase -
  SP4011_RS05265 (SP4011_09670) micA 1021041..1021745 (+) 705 WP_050223087.1 response regulator YycF Regulator
  SP4011_RS05270 (SP4011_09680) micB 1021738..1023087 (+) 1350 WP_000886220.1 cell wall metabolism sensor histidine kinase VicK Regulator
  SP4011_RS05275 (SP4011_09690) vicX 1023089..1023898 (+) 810 WP_000004964.1 MBL fold metallo-hydrolase Regulator
  SP4011_RS05280 (SP4011_09700) relB 1023989..1024231 (+) 243 WP_050223090.1 type II toxin-antitoxin system RelB family antitoxin -
  SP4011_RS05285 (SP4011_09710) - 1024233..1024487 (+) 255 WP_338620205.1 type II toxin-antitoxin system RelE/ParE family toxin -
  SP4011_RS05290 (SP4011_09720) - 1024563..1026440 (+) 1878 WP_338620207.1 Eco57I restriction-modification methylase domain-containing protein -
  SP4011_RS05295 (SP4011_09730) - 1026550..1027500 (+) 951 WP_000658133.1 Abi family protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29918.88 Da        Isoelectric Point: 6.1738

>NTDB_id=99117 SP4011_RS05275 WP_000004964.1 1023089..1023898(+) (vicX) [Streptococcus parapneumoniae strain SP4011]
MSETGFKYSILASGSSGNSFYLETPKKKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVMLTDTGYVSDRMAG
IVENADGYLIESNHDVEILRAGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=99117 SP4011_RS05275 WP_000004964.1 1023089..1023898(+) (vicX) [Streptococcus parapneumoniae strain SP4011]
ATGAGTGAAACAGGCTTTAAATACAGTATTTTAGCGTCGGGTTCCAGTGGAAATTCCTTTTATCTGGAAACCCCAAAAAA
GAAGCTTTTAGTGGATGCTGGCTTGTCTGGTAAAAAGATTACTAGCCTACTTGCTGAAATCAACCGCAAACCAGAAGATT
TGGATGCCATCTTGATTACGCATGAGCATTCAGACCATATCCATGGAGTGGGCGTTTTGGCTCGCAAGTATGGTATGGAT
CTTTATGCCAATGAAAAGACCTGGCAAGCTATGGAAAATAGTAAATATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
CTTTGAGATGGGCAAAACCAAAACCTTTGGAGATATTGACATCGAGAGTTTTGGTGTAAGTCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGACAAGAGTTTTGTCATGTTGACTGATACAGGTTATGTTAGTGATCGTATGGCAGGA
ATTGTCGAAAATGCAGATGGCTATCTTATCGAGTCCAACCATGATGTAGAGATTTTGCGAGCAGGATCTTATGCTTGGCG
ACTCAAACAACGAATCCTATCGGATCTAGGTCACCTTTCTAACGAAGATGGTGCCGAAGCCATGATTCGTACCTTAGGAA
ATCGTACTAAGAAAATCTACCTAGGACATTTGTCTAAAGAGAACAATATCAAGGAGCTGGCTCACATGACCATGGTCAAT
CAGCTAGCACAAGCTGATCTGGGAGTCGGAGTAGACTTTAAGGTTTATGATACCTCACCAGATACCGCAACACCCTTGAC
AGACATATAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1F0AUQ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

78.067

100

0.781

Multiple sequence alignment