Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   SP4011_RS03890 Genome accession   NZ_AP026968
Coordinates   738527..740485 (+) Length   652 a.a.
NCBI ID   WP_338619967.1    Uniprot ID   -
Organism   Streptococcus parapneumoniae strain SP4011     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 733527..745485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP4011_RS03865 (SP4011_06930) - 733662..734174 (+) 513 WP_338619961.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase -
  SP4011_RS03870 (SP4011_06940) - 734158..734808 (+) 651 WP_338619963.1 DUF1803 domain-containing protein -
  SP4011_RS03875 (SP4011_06950) - 734909..735100 (+) 192 WP_049521477.1 CsbD family protein -
  SP4011_RS03880 (SP4011_06960) - 735149..736594 (-) 1446 WP_338619964.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  SP4011_RS03885 (SP4011_06970) - 736700..738322 (+) 1623 WP_338619965.1 polysaccharide biosynthesis protein -
  SP4011_RS03890 (SP4011_06980) amiA 738527..740485 (+) 1959 WP_338619967.1 peptide ABC transporter substrate-binding protein Regulator
  SP4011_RS03895 (SP4011_06990) - 740801..741256 (+) 456 WP_338619969.1 hypothetical protein -
  SP4011_RS03900 (SP4011_07000) - 741619..742713 (+) 1095 WP_153224094.1 cystathionine gamma-synthase -
  SP4011_RS03905 (SP4011_07010) - 742721..743887 (+) 1167 WP_338619972.1 MalY/PatB family protein -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72818.18 Da        Isoelectric Point: 4.8607

>NTDB_id=99111 SP4011_RS03890 WP_338619967.1 738527..740485(+) (amiA) [Streptococcus parapneumoniae strain SP4011]
MKKSKAKYAILAGVMLSAGILLSACGNSSTASKTYNYVYSSDPSSLNYLAENRATTNDIVTNLVDGLMENDQYGNYVPSL
AEDWSVSKDGLTYTYKLRKDAKWYTADGEEYAPVTAQDFVTGLKYATDKKSEALYLVQDSVAGLDDYITGKTSDFSTVGV
KALDDQTVQYTLTRPESYWNSKTTSTILFPVNADFLKSKGDDFGKVDPSSILYNGPFLMKSFVSKSVIEFKKNPNYWDAK
NVFVDDVKLAYYDGSDQDALARNFVEGAYSYARLYPNSSSFEGIKEKYKDDIIYSMQDTTSYFLNFNLDRKSYKFTSKTS
DAEKKSTQEAVLNKNFRQAINFAYDRTAYGAQSQGEDGATKILRNLVVPPNFVSIKGKDFGEVVASKMVNYGKEWQGINF
ADAQDPYYNPEKAKAKFAEAKQELEAKGVTFPIHLDMTVDQAVKKGVQEANSMKQSIEAALGAENVVIDIQQLSTEDFDN
TSYLAQTAAQKDYDLYNGGWSPDYQDPSTYLDVFNVNSGGLMQNLGLEPGEANDKTKAVGLDVYTQMLEEANKEQDLAKR
YEKYADAQAWLVDSSLAIPNVSRGGTPTLRKTVPFSAPYSLAGNKGIESYKYLKVQDKTVTKDEYEKAKEKWLKEKEESN
KKAQEELAKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=99111 SP4011_RS03890 WP_338619967.1 738527..740485(+) (amiA) [Streptococcus parapneumoniae strain SP4011]
ATGAAAAAGTCTAAAGCCAAGTATGCAATACTTGCAGGTGTCATGTTAAGTGCAGGTATTTTGTTAAGCGCCTGTGGAAA
TTCTAGCACTGCATCAAAAACCTATAATTATGTTTATTCAAGTGATCCATCTAGTTTGAACTATCTAGCAGAAAACCGTG
CAACGACAAATGATATTGTGACCAATCTGGTAGATGGGCTCATGGAAAATGACCAATATGGAAATTATGTCCCATCCTTG
GCAGAGGATTGGAGTGTTTCTAAGGACGGTTTGACCTATACCTACAAACTTCGTAAGGATGCTAAATGGTATACTGCAGA
TGGAGAGGAATATGCTCCTGTAACTGCCCAAGATTTTGTAACTGGTTTGAAATATGCGACTGATAAAAAATCAGAAGCCT
TGTATCTAGTGCAGGACTCTGTTGCAGGTTTAGATGACTATATCACTGGGAAAACAAGCGACTTTTCAACTGTCGGAGTC
AAGGCTCTTGATGACCAAACTGTTCAATATACCTTGACACGACCAGAATCTTATTGGAACTCAAAAACAACTTCAACCAT
TCTCTTCCCAGTCAATGCAGATTTCTTGAAATCAAAAGGGGATGATTTTGGGAAGGTAGACCCATCTAGTATTTTGTACA
ATGGACCTTTCTTGATGAAATCCTTTGTTTCAAAATCAGTTATCGAATTCAAGAAAAATCCTAACTACTGGGATGCTAAA
AATGTCTTTGTAGATGATGTCAAATTGGCCTATTATGATGGTAGTGACCAAGATGCACTAGCTCGTAACTTTGTCGAGGG
AGCCTATAGCTATGCCCGTCTCTATCCAAATAGTTCAAGTTTTGAAGGGATTAAAGAAAAATACAAAGATGATATCATCT
ACAGTATGCAAGATACCACTTCTTATTTCTTAAACTTTAACCTGGATAGAAAATCTTATAAATTCACTTCAAAAACAAGT
GATGCTGAAAAGAAATCGACTCAGGAAGCAGTTCTAAATAAAAACTTCCGTCAAGCCATTAACTTTGCCTATGACCGTAC
GGCCTATGGAGCCCAATCTCAAGGAGAAGATGGTGCAACTAAGATTTTGCGTAACTTGGTTGTTCCTCCAAACTTCGTAA
GTATCAAGGGAAAAGACTTTGGTGAAGTAGTAGCCTCTAAGATGGTGAATTATGGCAAGGAATGGCAAGGAATCAACTTT
GCGGATGCCCAAGATCCATATTACAATCCAGAAAAAGCTAAGGCTAAATTTGCGGAAGCAAAGCAAGAGCTAGAAGCCAA
GGGAGTAACCTTCCCTATCCACTTGGACATGACAGTTGACCAAGCTGTTAAAAAGGGTGTTCAAGAGGCAAATTCTATGA
AGCAATCTATTGAAGCAGCCTTAGGTGCAGAAAATGTTGTAATTGATATTCAACAACTTTCTACTGAAGACTTTGATAAT
ACGAGCTATTTGGCTCAGACTGCAGCTCAGAAAGATTACGATCTATACAACGGTGGTTGGAGTCCAGACTATCAAGATCC
TTCAACCTATCTTGATGTATTTAACGTTAATTCTGGTGGTTTGATGCAAAATCTAGGTTTAGAGCCAGGTGAAGCCAATG
ACAAGACTAAGGCTGTTGGGCTGGATGTCTATACCCAAATGTTGGAAGAAGCTAATAAGGAGCAAGATCTTGCAAAACGC
TATGAAAAGTATGCTGATGCCCAAGCTTGGTTGGTAGATAGTTCTCTAGCAATTCCAAATGTTTCACGGGGTGGAACACC
AACATTGAGAAAAACAGTTCCATTCTCAGCGCCATATTCATTAGCTGGTAATAAAGGTATCGAATCATATAAATACCTCA
AAGTACAAGATAAGACAGTCACAAAAGACGAATATGAAAAAGCTAAAGAAAAATGGCTGAAAGAAAAAGAAGAATCCAAT
AAAAAAGCCCAAGAAGAATTGGCAAAACATGTCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

57.447

100

0.58
  amiA3 Streptococcus thermophilus LMG 18311

56.601

100

0.572
  amiA3 Streptococcus thermophilus LMD-9

56.297

100

0.569

Multiple sequence alignment