Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ACGHAS_RS06315 Genome accession   NZ_AP035801
Coordinates   1287335..1288072 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain E. coli JCM:5491     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1282335..1293072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACGHAS_RS06285 (ReJCM5491_12050) yfiL 1282494..1282859 (-) 366 WP_001298694.1 DUF2799 domain-containing protein -
  ACGHAS_RS06290 (ReJCM5491_12060) aroF 1283069..1284139 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  ACGHAS_RS06295 (ReJCM5491_12070) tyrA 1284150..1285271 (+) 1122 WP_000225230.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  ACGHAS_RS06300 (ReJCM5491_12080) pheA 1285314..1286474 (-) 1161 WP_000200106.1 bifunctional chorismate mutase/prephenate dehydratase -
  ACGHAS_RS06305 pheL 1286573..1286620 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  ACGHAS_RS06310 (ReJCM5491_12090) raiA 1286724..1287065 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  ACGHAS_RS06315 (ReJCM5491_12100) comL 1287335..1288072 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  ACGHAS_RS06320 (ReJCM5491_12110) rluD 1288207..1289187 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACGHAS_RS06325 (ReJCM5491_12120) yfiH 1289184..1289915 (+) 732 WP_000040136.1 purine nucleoside phosphorylase YfiH -
  ACGHAS_RS06330 (ReJCM5491_12130) clpC 1290045..1292618 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=99108 ACGHAS_RS06315 WP_000197686.1 1287335..1288072(-) (comL) [Escherichia coli strain E. coli JCM:5491]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=99108 ACGHAS_RS06315 WP_000197686.1 1287335..1288072(-) (comL) [Escherichia coli strain E. coli JCM:5491]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376