Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   SP4011_RS03670 Genome accession   NZ_AP026968
Coordinates   688336..689568 (+) Length   410 a.a.
NCBI ID   WP_338619915.1    Uniprot ID   -
Organism   Streptococcus parapneumoniae strain SP4011     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 683336..694568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP4011_RS03640 (SP4011_06470) - 683679..684356 (+) 678 WP_338619911.1 DnaD domain-containing protein -
  SP4011_RS03645 (SP4011_06480) tpiA 684454..685212 (+) 759 WP_112445489.1 triose-phosphate isomerase -
  SP4011_RS03650 (SP4011_06490) lytC 685246..686736 (+) 1491 WP_138702053.1 choline binding-anchored murein hydrolase LytC -
  SP4011_RS03655 (SP4011_06500) - 686974..687492 (+) 519 WP_338619913.1 Dps family protein -
  SP4011_RS03660 (SP4011_06510) - 687623..688129 (+) 507 WP_224218417.1 dihydrofolate reductase -
  SP4011_RS03665 (SP4011_06520) - 688129..688299 (+) 171 WP_000442258.1 hypothetical protein -
  SP4011_RS03670 (SP4011_06530) clpX 688336..689568 (+) 1233 WP_338619915.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  SP4011_RS03675 (SP4011_06540) yihA 689577..690164 (+) 588 WP_000422605.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  SP4011_RS03680 (SP4011_06550) - 690175..690555 (+) 381 WP_061457585.1 RidA family protein -
  SP4011_RS03685 (SP4011_06560) rapZ 690607..691497 (+) 891 WP_023937468.1 RNase adapter RapZ -
  SP4011_RS03690 (SP4011_06570) - 691494..692471 (+) 978 WP_338619918.1 YvcK family protein -
  SP4011_RS03695 (SP4011_06580) whiA 692468..693379 (+) 912 WP_338619920.1 DNA-binding protein WhiA -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45710.24 Da        Isoelectric Point: 4.4240

>NTDB_id=99109 SP4011_RS03670 WP_338619915.1 688336..689568(+) (clpX) [Streptococcus parapneumoniae strain SP4011]
MPTTRNNDMMVYCSFCGKSQEEVQKIIAGNNAFICNECVELAQEIIREELVEEVLADLSEVPKPIELLHILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREESEDVDLQKSNILMIGPTGSGKTFLAQTLAKSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTIASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDENSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKEAVD
GTDKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=99109 SP4011_RS03670 WP_338619915.1 688336..689568(+) (clpX) [Streptococcus parapneumoniae strain SP4011]
ATGCCTACAACTAGGAATAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAGCCAAGAAGAAGTACAAAAAATAAT
CGCAGGCAACAACGCCTTTATCTGTAATGAATGTGTGGAGTTGGCCCAGGAAATCATTCGAGAAGAATTGGTTGAGGAAG
TCTTGGCAGACTTGTCTGAGGTGCCAAAACCAATTGAACTCCTCCATATCTTGAACCACTATGTAATTGGTCAAGATCGT
GCCAAGCGTGCCTTGGCAGTGGCAGTTTACAACCACTACAAACGCATCAATTTCCACGATACGCGAGAAGAGTCAGAAGA
CGTAGATTTGCAGAAATCAAACATCTTGATGATTGGTCCAACTGGTTCAGGGAAAACTTTCCTTGCCCAGACCTTGGCTA
AGAGCTTGAATGTGCCTTTTGCTATTGCGGATGCGACAGCTCTGACGGAGGCTGGTTATGTGGGTGAGGACGTGGAAAAT
ATCCTCCTTAAACTCTTGCAGGCTGCTGACTTTAACATTGAACGTGCAGAGCGTGGCATTATCTACGTGGATGAAATTGA
CAAGATTGCCAAGAAGAGCGAAAACGTGTCTATCACACGTGATGTTTCTGGTGAAGGGGTGCAACAAGCTCTTCTCAAGA
TTATAGAGGGAACAATTGCAAGCGTGCCGCCTCAAGGTGGACGCAAACATCCGCAACAAGAGATGATTCAAGTGGATACT
AAAAATATCCTCTTCATCGTGGGTGGTGCCTTTGATGGCATTGAAGAAATTGTCAAACAACGTCTGGGAGAAAAAGTCAT
CGGATTTGGTCAAAATAATAAAGCGATTGATGAAAATAGCTCTTACATGCAAGAAATCATCGCAGAAGATATTCAAAAAT
TCGGGATTATTCCAGAATTGATTGGACGCTTGCCTGTCTTTGCTGCTCTTGAGCAATTGACGGTCGATGACTTGGTTCGT
ATCTTGAAAGAGCCAAGAAATGCCTTGGTCAAACAATACCAAACCTTGTTATCTTATGACGACGTTGAGTTGGAATTTGA
CGACGAAGCCCTTCAAGAAATTGCCAATAAGGCCATCGAACGGAAGACAGGGGCGCGTGGTCTTCGCTCCATCATCGAGG
AAACCATGCTGGACGTTATGTTTGAAGTACCGAGTCAGGAAAATGTGAAATTGGTCCGCATCACTAAAGAAGCTGTCGAT
GGAACGGATAAACCAATCCTAGAAACAGCCTAG

Domains

Predicted by InterproScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.341

100

0.863
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.463

98.049

0.563

Multiple sequence alignment