Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   SRS_RS08750 Genome accession   NZ_LN626917
Coordinates   1734359..1734961 (-) Length   200 a.a.
NCBI ID   WP_000271546.1    Uniprot ID   Q6GG62
Organism   Staphylococcus aureus strain ILRI_Eymole1/1 isolate Staphylococcus aureus isolate ILRI_Eymole1/1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1729359..1739961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SRS_RS08730 yajC 1730855..1731115 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  SRS_RS08735 tgt 1731134..1732273 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  SRS_RS08740 queA 1732296..1733321 (-) 1026 WP_001019178.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  SRS_RS08745 ruvB 1733323..1734327 (-) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  SRS_RS08750 ruvA 1734359..1734961 (-) 603 WP_000271546.1 Holliday junction branch migration protein RuvA Machinery gene
  SRS_RS08755 - 1734975..1735430 (-) 456 WP_000368902.1 ACT domain-containing protein -
  SRS_RS08760 obgE 1735443..1736735 (-) 1293 WP_000496098.1 GTPase ObgE -
  SRS_RS08765 rpmA 1737222..1737506 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  SRS_RS08770 - 1737518..1737838 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  SRS_RS08775 rplU 1737844..1738153 (-) 310 Protein_1721 50S ribosomal protein L21 -
  SRS_RS08780 mreD 1738446..1738976 (-) 531 WP_001259929.1 rod shape-determining protein MreD -
  SRS_RS08785 mreC 1738976..1739818 (-) 843 WP_000911041.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22292.44 Da        Isoelectric Point: 5.6716

>NTDB_id=990982 SRS_RS08750 WP_000271546.1 1734359..1734961(-) (ruvA) [Staphylococcus aureus strain ILRI_Eymole1/1 isolate Staphylococcus aureus isolate ILRI_Eymole1/1]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTEQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=990982 SRS_RS08750 WP_000271546.1 1734359..1734961(-) (ruvA) [Staphylococcus aureus strain ILRI_Eymole1/1 isolate Staphylococcus aureus isolate ILRI_Eymole1/1]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTCACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACACCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACATCGACGGAGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6GG62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425