Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   SP4011_RS01580 Genome accession   NZ_AP026968
Coordinates   274994..276958 (+) Length   654 a.a.
NCBI ID   WP_338619559.1    Uniprot ID   -
Organism   Streptococcus parapneumoniae strain SP4011     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 269994..281958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP4011_RS01550 (SP4011_02710) - 270682..272073 (+) 1392 WP_196312505.1 Cof-type HAD-IIB family hydrolase -
  SP4011_RS01555 - 272070..272228 (+) 159 WP_218774513.1 hypothetical protein -
  SP4011_RS01560 (SP4011_02720) - 272289..272741 (-) 453 WP_031223038.1 universal stress protein -
  SP4011_RS01565 - 272903..273196 (+) 294 WP_173254593.1 hypothetical protein -
  SP4011_RS01570 (SP4011_02730) - 273353..274567 (+) 1215 WP_000666459.1 pyridoxal phosphate-dependent aminotransferase -
  SP4011_RS01575 (SP4011_02740) rpmH 274721..274855 (+) 135 WP_000831905.1 50S ribosomal protein L34 -
  SP4011_RS01580 (SP4011_02750) amiA 274994..276958 (+) 1965 WP_338619559.1 peptide ABC transporter substrate-binding protein Regulator
  SP4011_RS01585 (SP4011_02760) - 277517..279658 (+) 2142 WP_338619560.1 YSIRK-type signal peptide-containing protein -

Sequence

Protein


Download         Length: 654 a.a.        Molecular weight: 72777.62 Da        Isoelectric Point: 4.5724

>NTDB_id=99088 SP4011_RS01580 WP_338619559.1 274994..276958(+) (amiA) [Streptococcus parapneumoniae strain SP4011]
MKKSKVMLFGAVAFTAGLALAACGSSQSSNAEKTYSYVFTSNPDTLDYITSTRGSTSSITTNLIDGLLENDQHGNLIPSM
AESWTVSKDGLTYTYKIRQGAKWYTSEGEEYADVTAHDFVTGLKYAADKKAENLYLVQDSIKGLADYVEGETSDFETVGV
KAVDDYTLQYTLNKPESYWNSKTTGGILSPVNEAFLKSKGDDFGSVTPSSILSNGPYLFKSFSSKSLIEFDKNPNYWDKD
NVKIEKVKLSFFDGSDQDSLARGFLEGNYSDGRIFPTSSVFNQLKKGNEDKITYTPQNSITFYYLFNVNRQSYKQTMKQS
DKEKTDSLAAMRNKDFRQAINFAFDRHAYAAQTNGEDGADRILRNTLIPSDFVQIGGKNFGDVVNEKIINYGTEWSNINL
NDAQPAFLNAEKAKAAFAKAKETLQAEGVTFPIHLDMPVDQTAKLDVQQASSFKQTVEETLGSDNVVIDVIQLSPDEKDQ
ATFFADTAEQKDYDIDISGWSGDYSDPKTYLDLLDPESGSQLNNIGLTAGKDNEVKEKIGLSAYKKLLDEADSEVENTQA
RYEKFAEVQAWLTDSALFLPVQSGGANPIFRKTVPFTGAFSFVGHKGDADNYKYVELQKEPVTAKQYQELYDKWLKEKAE
SNKKAQEDLANHIQ

Nucleotide


Download         Length: 1965 bp        

>NTDB_id=99088 SP4011_RS01580 WP_338619559.1 274994..276958(+) (amiA) [Streptococcus parapneumoniae strain SP4011]
ATGAAGAAATCAAAAGTTATGCTTTTTGGAGCTGTAGCTTTTACAGCAGGTCTAGCTCTAGCGGCATGTGGGTCTTCCCA
ATCTAGTAATGCTGAGAAAACCTACTCTTATGTATTTACTAGTAATCCTGATACCTTGGACTACATTACGTCAACACGTG
GTTCTACTTCAAGTATTACGACCAACCTGATTGATGGCTTGTTAGAAAATGATCAGCATGGTAATCTCATTCCATCTATG
GCTGAGTCATGGACGGTGTCAAAAGATGGCTTGACCTACACTTATAAAATCCGTCAGGGGGCGAAATGGTACACTTCAGA
GGGCGAAGAGTATGCGGATGTAACGGCTCATGACTTTGTGACAGGTCTCAAGTATGCAGCTGATAAAAAGGCTGAAAACT
TGTACTTGGTTCAAGACTCTATCAAGGGTCTCGCAGACTACGTTGAGGGGGAAACATCTGACTTTGAAACTGTTGGTGTT
AAGGCAGTGGATGACTATACTCTTCAATATACTTTGAATAAGCCGGAATCTTACTGGAATTCTAAGACTACTGGGGGTAT
TTTGAGTCCTGTAAATGAAGCTTTTTTGAAATCTAAAGGAGATGACTTTGGAAGTGTAACACCATCCAGTATCTTGTCAA
ATGGTCCTTACTTGTTTAAATCTTTCTCATCAAAATCTTTGATTGAATTTGATAAAAATCCTAATTACTGGGACAAGGAT
AATGTGAAAATTGAGAAAGTGAAGCTCTCTTTCTTTGACGGTTCTGATCAAGATAGTTTAGCGAGAGGATTTTTGGAAGG
GAACTACTCGGACGGTCGTATCTTCCCGACAAGTTCAGTGTTTAATCAGCTGAAAAAAGGGAATGAGGACAAAATCACCT
ACACACCACAAAACTCAATTACCTTCTATTACCTTTTTAACGTTAATCGTCAAAGCTACAAGCAGACCATGAAACAGTCT
GATAAGGAAAAGACAGATTCACTTGCAGCCATGCGAAATAAGGATTTCCGTCAGGCTATCAACTTTGCCTTTGACCGTCA
TGCTTATGCAGCGCAGACAAATGGTGAAGATGGAGCAGACCGTATCTTGCGTAACACGCTTATCCCAAGTGATTTTGTCC
AAATCGGTGGTAAAAACTTTGGAGATGTTGTCAATGAAAAGATTATTAACTATGGTACAGAGTGGTCGAATATCAATTTA
AATGATGCGCAACCTGCCTTTTTGAATGCTGAAAAAGCCAAGGCAGCATTTGCTAAAGCTAAAGAAACCTTGCAAGCAGA
AGGCGTGACCTTCCCAATTCATTTGGATATGCCGGTTGACCAGACGGCCAAGTTAGATGTGCAACAAGCAAGTTCCTTTA
AGCAGACAGTGGAAGAAACCCTTGGGTCGGACAATGTTGTGATTGACGTGATCCAACTTTCTCCAGACGAGAAGGATCAA
GCTACATTCTTTGCAGATACAGCTGAACAAAAGGACTATGACATTGATATTTCAGGTTGGAGTGGAGATTACTCAGATCC
TAAAACTTATCTTGATCTCTTGGATCCAGAATCAGGTTCTCAGCTTAATAATATTGGGTTAACTGCTGGAAAAGATAATG
AGGTAAAAGAAAAAATTGGACTTTCTGCTTACAAGAAGTTACTAGATGAAGCAGATAGCGAAGTTGAAAATACTCAGGCT
CGTTATGAAAAATTTGCTGAAGTACAAGCTTGGTTGACTGACAGTGCCCTCTTCCTACCAGTTCAAAGTGGCGGAGCCAA
CCCAATCTTCCGTAAGACTGTACCGTTCACAGGAGCCTTCTCGTTCGTTGGTCATAAGGGAGATGCTGATAACTACAAAT
ATGTTGAACTGCAAAAAGAGCCGGTAACTGCGAAACAGTACCAGGAACTCTATGATAAATGGCTAAAAGAAAAAGCCGAG
TCAAATAAAAAAGCTCAGGAAGATTTAGCTAATCATATTCAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

56.231

100

0.566
  amiA3 Streptococcus thermophilus LMD-9

55.015

100

0.554
  amiA3 Streptococcus thermophilus LMG 18311

54.711

100

0.55

Multiple sequence alignment