Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   SP4011_RS01535 Genome accession   NZ_AP026968
Coordinates   268347..269357 (+) Length   336 a.a.
NCBI ID   WP_173212244.1    Uniprot ID   -
Organism   Streptococcus parapneumoniae strain SP4011     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 263347..274357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP4011_RS01505 (SP4011_02620) - 264340..264531 (+) 192 WP_012972435.1 hypothetical protein -
  SP4011_RS01510 (SP4011_02630) - 264528..264722 (+) 195 WP_112445176.1 hypothetical protein -
  SP4011_RS01515 (SP4011_02640) - 264709..265593 (+) 885 WP_112445174.1 ATP-binding cassette domain-containing protein -
  SP4011_RS01520 (SP4011_02650) - 265595..266332 (+) 738 WP_164226905.1 ABC transporter permease -
  SP4011_RS01525 (SP4011_02660) - 266332..267429 (+) 1098 WP_338619554.1 sensor histidine kinase -
  SP4011_RS01530 (SP4011_02670) - 267430..268029 (+) 600 WP_338619555.1 response regulator transcription factor -
  SP4011_RS01535 (SP4011_02680) ccpA 268347..269357 (+) 1011 WP_173212244.1 catabolite control protein A Regulator
  SP4011_RS01540 (SP4011_02690) - 269421..269657 (+) 237 WP_338619557.1 hypothetical protein -
  SP4011_RS01545 (SP4011_02700) - 269654..270616 (-) 963 WP_173233624.1 asparaginase domain-containing protein -
  SP4011_RS01550 (SP4011_02710) - 270682..272073 (+) 1392 WP_196312505.1 Cof-type HAD-IIB family hydrolase -
  SP4011_RS01555 - 272070..272228 (+) 159 WP_218774513.1 hypothetical protein -
  SP4011_RS01560 (SP4011_02720) - 272289..272741 (-) 453 WP_031223038.1 universal stress protein -
  SP4011_RS01565 - 272903..273196 (+) 294 WP_173254593.1 hypothetical protein -

Sequence


Protein


Download         Length: 336 a.a.        Molecular weight: 37094.13 Da        Isoelectric Point: 5.5357

>NTDB_id=99087 SP4011_RS01535 WP_173212244.1 268347..269357(+) (ccpA) [Streptococcus parapneumoniae strain SP4011]
MNADDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNITNGYFS
SLAKGIDDIAEMYKYNIVLANSDEDNEKEVSVVNTLFSKQVDGIIFMGYHLTDKIRSEFSRSRTPIVLAGTVDVEHQLPS
VNIDYKQATIDAVSYLVKENERIAFVSGPLVDDINGKVRLVGYKEALKKAGIAYSEGLVFESKYSYDDGYALAERLISSN
ATAAVVTGDELAAGVLNGLADKGVSVPEDFEIITSDDSQISRFTRPNLTTIAQPLYDLGAISMRMLTKIMHKEELEEREV
LLPHGLTERRSTRKRK

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=99087 SP4011_RS01535 WP_173212244.1 268347..269357(+) (ccpA) [Streptococcus parapneumoniae strain SP4011]
ATGAATGCAGATGATACAGTAACCATTTATGATGTCGCTCGTGAAGCAGGTGTTTCCATGGCGACGGTCAGCCGTGTGGT
CAATGGCAATAAAAATGTAAAAGAGAATACCCGTAAAAAAGTGCTAGAGGTAATTGATCGTTTGGATTATCGTCCAAATG
CAGTTGCGCGTGGTCTTGCAAGTAAAAAGACAACTACTGTTGGTGTCGTGATTCCAAATATTACCAATGGTTATTTTTCG
AGTTTGGCCAAGGGGATTGATGATATTGCAGAAATGTACAAGTACAATATTGTCCTAGCTAATAGCGATGAAGATAACGA
GAAAGAAGTTTCTGTTGTCAATACCCTCTTTTCAAAGCAGGTAGATGGCATTATCTTTATGGGTTATCACTTGACAGATA
AAATTCGCTCAGAATTTTCGCGTTCACGTACTCCGATTGTTCTCGCAGGAACTGTCGATGTTGAGCACCAGTTGCCAAGT
GTCAACATTGACTATAAGCAAGCAACGATTGATGCAGTGAGTTACCTTGTTAAAGAAAATGAACGTATTGCTTTTGTTAG
CGGTCCGCTAGTGGATGACATCAATGGTAAGGTTCGTTTAGTTGGCTACAAGGAAGCCTTGAAGAAAGCAGGAATCGCTT
ATAGTGAAGGTTTGGTATTTGAATCTAAGTATAGCTATGATGATGGTTACGCCTTGGCAGAGCGTTTGATTTCATCAAAT
GCAACTGCAGCAGTTGTGACAGGTGATGAGTTGGCAGCAGGAGTCTTGAACGGTTTGGCTGATAAGGGTGTTTCTGTGCC
AGAAGATTTTGAAATTATTACTAGTGATGATTCACAAATCTCACGCTTTACCCGTCCAAACTTGACAACGATTGCCCAAC
CTCTTTATGACCTTGGTGCCATTAGTATGCGTATGTTGACCAAGATTATGCACAAGGAAGAGTTGGAAGAACGTGAAGTT
CTCTTACCTCATGGTTTGACAGAACGTCGTTCAACACGAAAACGGAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

98.214

100

0.982

  ccpA Streptococcus gordonii str. Challis substr. CH1

87.425

99.405

0.869

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

58.006

98.512

0.571


Multiple sequence alignment