Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACNRMP_RS07215 Genome accession   NZ_JBLWDC010000001
Coordinates   1578248..1578748 (+) Length   166 a.a.
NCBI ID   WP_011002677.1    Uniprot ID   Q8XVQ9
Organism   Ralstonia pseudosolanacearum strain PD 7123     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1573248..1583748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNRMP_RS07200 (ACNRMP_07200) - 1574061..1576406 (-) 2346 WP_011002674.1 NADP-dependent malic enzyme -
  ACNRMP_RS07205 (ACNRMP_07205) thiL 1576649..1577647 (+) 999 WP_020832689.1 thiamine-phosphate kinase -
  ACNRMP_RS07210 (ACNRMP_07210) - 1577644..1578222 (+) 579 WP_028853639.1 phosphatidylglycerophosphatase A -
  ACNRMP_RS07215 (ACNRMP_07215) cinA 1578248..1578748 (+) 501 WP_011002677.1 CinA family protein Machinery gene
  ACNRMP_RS07220 (ACNRMP_07220) - 1578966..1580003 (-) 1038 WP_231680452.1 cation diffusion facilitator family transporter -
  ACNRMP_RS07225 (ACNRMP_07225) pyrF 1580038..1580853 (-) 816 WP_028853640.1 orotidine-5'-phosphate decarboxylase -
  ACNRMP_RS07230 (ACNRMP_07230) corA 1581073..1582035 (+) 963 WP_011002681.1 magnesium/cobalt transporter CorA -
  ACNRMP_RS07235 (ACNRMP_07235) - 1582073..1583218 (-) 1146 WP_028853641.1 pectate lyase -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 17466.92 Da        Isoelectric Point: 6.9696

>NTDB_id=990694 ACNRMP_RS07215 WP_011002677.1 1578248..1578748(+) (cinA) [Ralstonia pseudosolanacearum strain PD 7123]
MAESRALAQLAELVGDTLHKRSLMVATAESCTAGLVGAAITDIPGASAWFERGFVTYSNEAKSQMLGVPATLIREHGAVS
EPVAHAMAEGAVLNSRAQVALAVTGVAGPTGGTPDKPVGMVCFGWSNRLQTRVETRHFKGDRKQIRLQAAEHALRGLLDF
LDAAES

Nucleotide


Download         Length: 501 bp        

>NTDB_id=990694 ACNRMP_RS07215 WP_011002677.1 1578248..1578748(+) (cinA) [Ralstonia pseudosolanacearum strain PD 7123]
ATGGCTGAATCCCGCGCGCTGGCGCAACTGGCCGAACTGGTGGGCGACACGCTGCACAAGCGCAGTCTGATGGTGGCGAC
GGCGGAATCGTGCACCGCCGGGCTCGTCGGCGCGGCCATCACCGACATCCCGGGCGCGTCCGCGTGGTTCGAGCGCGGCT
TCGTCACGTATTCGAACGAAGCGAAATCGCAGATGCTGGGCGTGCCGGCCACGCTGATCCGCGAGCATGGCGCGGTGAGC
GAGCCGGTGGCGCACGCCATGGCCGAAGGCGCCGTGCTCAACAGCCGCGCGCAGGTGGCGCTGGCCGTGACGGGCGTGGC
GGGACCGACCGGCGGCACGCCCGACAAACCCGTCGGCATGGTGTGCTTCGGCTGGAGCAACCGCCTGCAGACGCGGGTGG
AAACCCGCCACTTCAAGGGCGACCGCAAGCAGATCCGGCTACAAGCCGCCGAGCACGCGCTGCGCGGCCTGCTGGACTTC
CTAGACGCCGCGGAAAGCTAG

Domains

Predicted by InterProScan.

Competence-damaged protein (CinA)

(9-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8XVQ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae R36A

40.816

88.554

0.361
  cinA Streptococcus pneumoniae Rx1

40.816

88.554

0.361
  cinA Streptococcus pneumoniae R6

40.816

88.554

0.361
  cinA Streptococcus pneumoniae D39

40.816

88.554

0.361