Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   MasN3_RS22900 Genome accession   NZ_AP026966
Coordinates   5081697..5083151 (-) Length   484 a.a.
NCBI ID   WP_281910491.1    Uniprot ID   -
Organism   Massilia varians strain N-3     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5076697..5088151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MasN3_RS22890 (MasN3_45300) - 5076933..5078039 (-) 1107 WP_281910489.1 ribonucleotide-diphosphate reductase subunit beta -
  MasN3_RS22895 (MasN3_45310) - 5078164..5081085 (-) 2922 WP_281910490.1 ribonucleoside-diphosphate reductase subunit alpha -
  MasN3_RS22900 (MasN3_45320) pilR 5081697..5083151 (-) 1455 WP_281910491.1 sigma-54 dependent transcriptional regulator Regulator
  MasN3_RS22905 (MasN3_45330) - 5083185..5084837 (-) 1653 WP_281910492.1 nitrogen regulation protein NR(II) -
  MasN3_RS22910 (MasN3_45340) - 5084846..5085097 (-) 252 WP_281910494.1 PP0621 family protein -
  MasN3_RS22915 (MasN3_45350) - 5085094..5085897 (-) 804 WP_281910495.1 inner membrane protein YpjD -
  MasN3_RS22920 (MasN3_45360) ffh 5086158..5087525 (+) 1368 WP_281910496.1 signal recognition particle protein -
  MasN3_RS22925 (MasN3_45370) - 5087758..5088132 (+) 375 WP_281910497.1 SWIB/MDM2 domain-containing protein -

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 51648.36 Da        Isoelectric Point: 5.0564

>NTDB_id=99068 MasN3_RS22900 WP_281910491.1 5081697..5083151(-) (pilR) [Massilia varians strain N-3]
MTAPRILVVDDEADLRELLEITLLKMGLDVDSAATLRQARGLVEEHDYALILTDMRLPDGLGLELVREVTASHKGTPIAV
ITAYGSAENAVVALKAGAFDYISKPVALDALRVMVRSALKLSETPAPQPDGGVPGSRMIGTSSAMAALRAQIGRLARSNA
PIAITGESGSGKELAAREIHAQSSRAGKPFVAVNCGAIPETLMEAEFFGYRKGAFTGAAEERDGFFQAANGGTLMLDEVA
DLPLPMQVKLLRAIQERRVRKIGATVEEPVDVRIISATHQDLAKCVEQGRFRQDLFYRLNVIELSLPPLRERIDDLAPLV
DAILARLAGPGQAALGPGVLDALRAYSFPGNIRELENVLERALAFANDGVIDVGDLSLKAARPGDTARREPAASAPAPVP
LPEPVPTPVSPAAEAAPACAMLGPNGLPANLPEYLSQVEREIIGRALQQTQFNRTQAASLLGISLRQLRYQMQKLEICAP
DDHA

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=99068 MasN3_RS22900 WP_281910491.1 5081697..5083151(-) (pilR) [Massilia varians strain N-3]
ATGACCGCACCCCGCATCCTGGTGGTCGACGACGAAGCCGACCTGCGCGAACTGCTCGAGATCACCCTGCTCAAGATGGG
GCTGGACGTCGACAGCGCCGCCACGCTGCGCCAGGCGCGCGGCCTGGTCGAGGAGCACGACTATGCGCTGATCCTGACCG
ACATGCGCCTGCCGGACGGCCTCGGGCTGGAACTGGTGCGCGAGGTGACGGCCTCGCACAAGGGCACGCCGATCGCCGTC
ATCACCGCCTACGGCAGCGCCGAGAACGCGGTAGTGGCGCTCAAGGCCGGCGCCTTCGACTACATCTCCAAGCCGGTGGC
CCTGGATGCGCTGCGTGTGATGGTGCGCTCGGCGCTGAAGCTTTCCGAAACACCGGCGCCGCAGCCGGACGGCGGGGTGC
CCGGCTCGCGCATGATCGGCACCTCAAGCGCGATGGCGGCGCTGCGCGCCCAGATCGGACGCCTGGCGCGCTCGAACGCG
CCGATCGCGATCACCGGCGAATCCGGCAGCGGCAAGGAACTGGCGGCGCGCGAGATCCACGCCCAGAGTTCGCGCGCCGG
CAAGCCTTTTGTTGCGGTGAACTGCGGCGCCATTCCCGAAACCCTGATGGAGGCCGAGTTCTTCGGCTACCGCAAGGGCG
CCTTCACCGGGGCGGCGGAAGAGCGCGACGGCTTCTTCCAGGCCGCCAACGGCGGCACTCTGATGCTGGACGAAGTGGCC
GACCTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAGCGGCGCGTGCGCAAGATCGGCGCCACCGTCGA
AGAACCGGTGGACGTGCGCATCATCAGCGCCACCCACCAGGACCTGGCCAAGTGCGTGGAGCAGGGCAGGTTCAGGCAGG
ATCTGTTCTACCGCCTGAACGTGATCGAACTGTCGCTGCCGCCGCTGCGCGAACGCATCGACGACCTGGCGCCGCTGGTG
GACGCGATCCTGGCGCGCCTGGCCGGGCCGGGCCAGGCCGCGCTCGGCCCGGGCGTGCTCGACGCGCTGCGCGCCTACTC
CTTTCCCGGAAATATCCGCGAGCTGGAGAACGTGCTGGAGCGGGCGCTGGCCTTTGCCAACGACGGCGTGATCGACGTGG
GCGACCTGTCGCTCAAGGCGGCGCGGCCGGGCGATACGGCGCGGCGCGAACCGGCCGCGAGCGCGCCGGCGCCCGTGCCG
CTGCCTGAACCGGTGCCGACACCGGTGTCTCCCGCGGCGGAGGCGGCGCCCGCTTGCGCCATGCTGGGCCCGAATGGCTT
GCCCGCCAACCTGCCCGAGTACCTGAGCCAGGTCGAGCGCGAGATCATCGGACGCGCCCTGCAGCAGACCCAGTTCAACC
GCACCCAGGCGGCAAGCCTGCTCGGCATCAGCCTGCGCCAGCTGCGCTACCAGATGCAGAAGCTGGAGATCTGCGCGCCG
GACGACCATGCATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-115)

Bacterial regulatory protein, Fis family (HTH_8)

(435-475)

Sigma-54 interaction domain (Sigma54_activat)

(138-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

51.458

99.174

0.51
  pilR Acinetobacter baumannii strain A118

42.05

98.76

0.415

Multiple sequence alignment