Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   GBSCOH1_RS08365 Genome accession   NZ_HG939456
Coordinates   1673996..1674505 (-) Length   169 a.a.
NCBI ID   WP_000392202.1    Uniprot ID   -
Organism   Streptococcus agalactiae COH1     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 1668996..1679505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBSCOH1_RS08340 (GBSCOH1_1603) tsaD 1669509..1670519 (-) 1011 WP_000655087.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  GBSCOH1_RS08345 (GBSCOH1_1604) rimI 1670595..1671002 (-) 408 WP_000445945.1 ribosomal protein S18-alanine N-acetyltransferase -
  GBSCOH1_RS08350 (GBSCOH1_1605) tsaB 1671004..1671696 (-) 693 WP_000978604.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  GBSCOH1_RS08355 (GBSCOH1_1606) - 1671875..1672105 (+) 231 WP_000639570.1 DNA-dependent RNA polymerase subunit epsilon -
  GBSCOH1_RS08360 (GBSCOH1_1607) rnjA 1672159..1673838 (+) 1680 WP_000065498.1 ribonuclease J1 -
  GBSCOH1_RS08365 (GBSCOH1_1608) lytF 1673996..1674505 (-) 510 WP_000392202.1 CHAP domain-containing protein Regulator
  GBSCOH1_RS08370 (GBSCOH1_1609) glnA 1674653..1675999 (-) 1347 WP_000156225.1 type I glutamate--ammonia ligase -
  GBSCOH1_RS08375 (GBSCOH1_1610) - 1676033..1676404 (-) 372 WP_000664338.1 MerR family transcriptional regulator -
  GBSCOH1_RS08380 (GBSCOH1_1611) - 1676484..1677023 (-) 540 WP_000854120.1 FUSC family protein -
  GBSCOH1_RS08385 (GBSCOH1_1612) - 1677286..1678482 (-) 1197 WP_001096753.1 phosphoglycerate kinase -
  GBSCOH1_RS08390 (GBSCOH1_1613) - 1678617..1679486 (-) 870 WP_000858929.1 5'-nucleotidase, lipoprotein e(P4) family -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18332.26 Da        Isoelectric Point: 4.4055

>NTDB_id=989898 GBSCOH1_RS08365 WP_000392202.1 1673996..1674505(-) (lytF) [Streptococcus agalactiae COH1]
MEENMNIKQLKSKTMLGTVALVSAFSFASTNADANTYNYAVDVDYLASAEEIAQAHPASNTFPLGQCTWGVKEMATWAGN
WWGNGGDWAASAASAGYTVGTQPRVGSIVCWTDGSYGHVAYVTAVDPVTNKIQVLESNYAGHQWIDNYRGWFDPQNTVTP
GVVSYIYPN

Nucleotide


Download         Length: 510 bp        

>NTDB_id=989898 GBSCOH1_RS08365 WP_000392202.1 1673996..1674505(-) (lytF) [Streptococcus agalactiae COH1]
ATGGAGGAAAACATGAACATAAAACAATTAAAGTCTAAAACAATGCTTGGAACAGTGGCTTTGGTGTCCGCTTTTTCATT
TGCTTCAACAAATGCAGATGCGAATACATATAACTATGCAGTAGATGTAGACTACCTAGCAAGTGCGGAGGAAATTGCTC
AAGCACATCCAGCTAGTAATACGTTTCCACTAGGTCAATGCACATGGGGTGTAAAGGAGATGGCAACATGGGCAGGTAAC
TGGTGGGGAAACGGTGGTGATTGGGCTGCGAGCGCCGCATCAGCTGGTTATACAGTAGGGACACAACCGCGCGTGGGTTC
TATCGTATGTTGGACTGATGGTAGTTATGGACATGTGGCTTATGTTACAGCTGTAGATCCTGTCACTAATAAAATTCAGG
TTTTAGAATCTAATTATGCAGGTCATCAATGGATTGATAATTATCGTGGTTGGTTTGATCCACAAAATACAGTAACACCA
GGGGTAGTTAGCTACATTTATCCGAATTAA

Domains

Predicted by InterProScan.

CHAP domain (CHAP)

(60-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

57.576

78.107

0.45
  lytF Streptococcus gordonii str. Challis substr. CH1

57.576

78.107

0.45
  SMU.836 Streptococcus mutans UA159

55.118

75.148

0.414