Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   AAFQ93_RS08725 Genome accession   NZ_CP152419
Coordinates   1824909..1826867 (-) Length   652 a.a.
NCBI ID   WP_375555205.1    Uniprot ID   -
Organism   Streptococcus nidrosiense strain SO-23-1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1819909..1831867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFQ93_RS08715 (AAFQ93_08655) - 1822498..1823664 (-) 1167 WP_223139980.1 MalY/PatB family protein -
  AAFQ93_RS08720 (AAFQ93_08660) - 1823669..1824763 (-) 1095 WP_223139981.1 cystathionine gamma-synthase -
  AAFQ93_RS08725 (AAFQ93_08665) amiA 1824909..1826867 (-) 1959 WP_375555205.1 peptide ABC transporter substrate-binding protein Regulator
  AAFQ93_RS08730 (AAFQ93_08670) - 1827069..1828691 (-) 1623 WP_375555206.1 oligosaccharide flippase family protein -
  AAFQ93_RS08735 (AAFQ93_08675) - 1828795..1830240 (+) 1446 WP_375555207.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  AAFQ93_RS08740 (AAFQ93_08680) - 1830283..1830933 (-) 651 WP_375555208.1 DUF1803 domain-containing protein -
  AAFQ93_RS08745 (AAFQ93_08685) - 1830917..1831429 (-) 513 WP_375555209.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72743.85 Da        Isoelectric Point: 4.7326

>NTDB_id=989188 AAFQ93_RS08725 WP_375555205.1 1824909..1826867(-) (amiA) [Streptococcus nidrosiense strain SO-23-1]
MKKSKAKYMALAGVALSAGLLLAACSNSAGSTKTYNYVYSSDPSSLNYLAENRATTNDIVTNLVDGLMENDQYGNYVPSL
AEDWTVSQDGLTYTYKLRKDAKWYTSEGEEYAPVTAQDFVTGLKYAADKKSEALYLVQDSVAGLDDYINGKTTDFSTVGV
KAIDDQTVQYTLTRPESYWNSKTTSTILFPVNADFLKSKGDDFGKVDPSSILYNGPFLMKSFVSKSVIEFKKNPNYWDEK
NVFVDDVKLAYYDGSDQDALARNFVEGVYSYARLYPNSSSFEGIKEKNKDNIIYSMQNATSYYLNFNLDRKSYNFTSKSS
DIEKKSTQEAVLNKNFRQAFNYAYNRTAYGAQSQGEDGATKIIRNLVVPPTFVSINGKDFGDVVSEKMVNYGQEWQGINF
ADAQDPYYNPDKAKAKFAEAKKELEAKGVQFPIHLDVTVDQSAKKGVLEASSLKQSIESVLGAENVVIDIQQLSTDDYDN
SGYLAQTAAQKDFDIYNGGWSADYLDPSSYLDILNVNNGGMLQNIGLEPGEVNDKAKAVGLDTYTQMLEEANKEQEPAKR
YEKYAEVQAWLVDSALAIPNVSQGGTPTLRKTVPFSSPFSQAGNKGVESYKYLKLQDKTVTADEYEKARQKWLKEKEESN
KKAQEELAKHIK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=989188 AAFQ93_RS08725 WP_375555205.1 1824909..1826867(-) (amiA) [Streptococcus nidrosiense strain SO-23-1]
ATGAAAAAGTCTAAGGCAAAATATATGGCGCTGGCAGGCGTCGCTCTAAGTGCTGGTCTGCTATTGGCGGCTTGTAGCAA
CTCAGCTGGTTCAACTAAAACATACAACTATGTCTATTCTAGCGATCCGTCTAGTTTGAACTATCTTGCAGAAAACCGTG
CAACAACCAATGACATCGTTACCAATTTGGTAGATGGGTTGATGGAAAATGACCAATACGGTAACTACGTTCCATCCTTG
GCAGAAGATTGGACTGTTTCTCAGGACGGTTTGACATACACTTATAAACTTCGTAAAGATGCTAAGTGGTATACCTCTGA
AGGTGAAGAATATGCTCCAGTAACTGCCCAAGATTTTGTAACTGGTTTGAAATATGCTGCTGATAAAAAATCCGAAGCTT
TGTACCTGGTTCAAGATTCTGTAGCAGGTTTGGATGACTATATCAACGGGAAAACAACTGACTTTTCAACTGTCGGTGTT
AAGGCGATTGACGACCAAACAGTTCAGTACACTTTGACACGACCAGAATCTTATTGGAATTCTAAAACAACATCAACCAT
TCTCTTCCCTGTCAATGCAGACTTCCTGAAATCAAAAGGGGATGATTTTGGTAAGGTAGACCCTTCTAGTATTTTGTACA
ATGGACCTTTCTTGATGAAATCCTTTGTTTCAAAATCTGTCATCGAGTTCAAGAAAAATCCCAACTACTGGGATGAAAAA
AATGTCTTTGTAGATGATGTGAAATTGGCCTATTATGATGGTAGTGACCAAGATGCACTAGCTCGTAACTTTGTAGAAGG
AGTCTACAGCTACGCACGTCTCTATCCAAATAGCTCAAGCTTTGAAGGAATTAAAGAGAAGAACAAGGATAACATCATCT
ATAGTATGCAAAATGCAACTTCTTATTACTTGAACTTCAACTTGGACAGAAAGTCTTATAACTTCACTTCTAAGTCCTCA
GATATCGAAAAGAAATCAACTCAAGAAGCAGTTCTGAATAAAAACTTCCGTCAAGCCTTTAACTATGCTTATAACCGTAC
AGCCTATGGAGCTCAATCTCAAGGGGAAGACGGAGCAACGAAGATTATTCGTAACCTAGTTGTACCTCCTACATTTGTAA
GCATCAACGGAAAAGACTTTGGTGATGTTGTTTCAGAAAAGATGGTCAACTATGGCCAAGAATGGCAAGGAATCAACTTT
GCAGATGCGCAAGACCCATACTACAATCCTGACAAGGCTAAGGCTAAATTTGCGGAAGCCAAGAAAGAATTGGAAGCTAA
GGGTGTGCAATTCCCAATCCACTTGGATGTAACAGTTGACCAATCAGCTAAAAAAGGTGTACTTGAAGCAAGCTCTTTGA
AACAATCCATCGAATCTGTTCTAGGAGCTGAGAATGTGGTTATCGATATCCAACAATTATCAACAGATGATTACGATAAT
TCTGGCTACCTCGCTCAAACTGCAGCTCAAAAAGACTTTGATATCTATAATGGCGGTTGGAGTGCGGACTACTTGGATCC
ATCAAGTTATCTTGATATCTTAAATGTCAATAACGGTGGTATGTTGCAAAACATTGGTCTAGAACCAGGTGAGGTAAATG
ACAAGGCTAAGGCAGTTGGTCTGGATACTTACACTCAAATGCTAGAAGAAGCGAACAAGGAGCAAGAACCAGCAAAACGT
TATGAAAAATATGCTGAAGTTCAAGCTTGGCTCGTTGATAGCGCCCTTGCTATTCCAAACGTTTCTCAGGGTGGAACACC
GACCTTGAGAAAGACAGTTCCATTCTCATCGCCATTCTCACAAGCTGGAAATAAGGGTGTCGAATCATACAAGTACCTCA
AGTTGCAAGATAAGACTGTAACGGCTGATGAGTATGAAAAAGCTAGACAAAAATGGCTGAAAGAAAAAGAAGAATCTAAT
AAAAAAGCCCAAGAAGAATTAGCTAAACACATTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

56.991

100

0.575
  amiA3 Streptococcus thermophilus LMG 18311

56.753

100

0.574
  amiA3 Streptococcus thermophilus LMD-9

56.449

100

0.571

Multiple sequence alignment