Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   AAFQ93_RS07885 Genome accession   NZ_CP152419
Coordinates   1647705..1649672 (-) Length   655 a.a.
NCBI ID   WP_074324191.1    Uniprot ID   -
Organism   Streptococcus nidrosiense strain SO-23-1     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1642705..1654672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFQ93_RS07845 (AAFQ93_07785) - 1642880..1643377 (-) 498 WP_061863210.1 GAF domain-containing protein -
  AAFQ93_RS07850 (AAFQ93_07790) rpsA 1643463..1644665 (-) 1203 WP_375555104.1 30S ribosomal protein S1 -
  AAFQ93_RS07865 (AAFQ93_07805) - 1645038..1645268 (-) 231 WP_000037109.1 DUF2969 domain-containing protein -
  AAFQ93_RS07870 (AAFQ93_07810) pcp 1645403..1646047 (-) 645 WP_375555105.1 pyroglutamyl-peptidase I -
  AAFQ93_RS07875 (AAFQ93_07815) - 1646061..1646984 (-) 924 WP_375555106.1 DUF979 domain-containing protein -
  AAFQ93_RS07880 (AAFQ93_07820) - 1646981..1647670 (-) 690 WP_375555107.1 DUF969 domain-containing protein -
  AAFQ93_RS07885 (AAFQ93_07825) amiA3 1647705..1649672 (-) 1968 WP_074324191.1 peptide ABC transporter substrate-binding protein Regulator
  AAFQ93_RS07890 (AAFQ93_07830) - 1649694..1650716 (-) 1023 WP_375555108.1 branched-chain amino acid aminotransferase -
  AAFQ93_RS07895 (AAFQ93_07835) parC 1650841..1653318 (-) 2478 WP_375555109.1 DNA topoisomerase IV subunit A -
  AAFQ93_RS07900 (AAFQ93_07840) - 1653537..1654355 (-) 819 WP_375555110.1 aminoglycoside 6-adenylyltransferase -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72773.34 Da        Isoelectric Point: 4.9565

>NTDB_id=989182 AAFQ93_RS07885 WP_074324191.1 1647705..1649672(-) (amiA3) [Streptococcus nidrosiense strain SO-23-1]
MKTKKWMLTAGVVLSTAVLLVACGKADKEADAPTTFSYVYGVDPSSLDYSIATRTSTTDIIGNVVDGLLENDEYGNLIPS
LAEDWSVSQDGLTYTYKLRKGVKWYTSEGEEYAEVTAHDFVTGLKHVADGKSDGVTLIQNSIKGLNEYMTGETNDFSTVG
VKAVDDYTVEYTLNAPETFWNSKVTSATMLPVNEEFLKASGKNYGTVSPAGILYNGPYILKTLTSKSLIEYEKNPNYWDK
EKVKIEKVKLTYYDGSDQESLIRSFSSGVYTTARLFPSSSNFASTLEQYGDKITYSPQDSTSYYFTFNVNRQSFNKTAKT
SEEQKTSTKEAMLNKDFRQAINFAFNRHSYAAQLNGEDGADKIIRNSLVPDNFVQSGGKNFGDIAQKELVNYGDQWKGVE
LVDGKDTIYNPDKAKASFEKAKKELEAKGVTFPIHLDVPVEQTDTIAVQQSNSFKQSIESTLGSENVVIDVLQMTDNEKE
SITSQARVPAQKDYDLNSTGWAPSYQDPASYLNIMDPKTGSAMKHLGITKGKDKEVVAQLGLDEYKKLLDDAVSETSDLD
KRYEKYAKAQAWLTDSSLLMPTASSGGSPVVSNIVPFSKPYSQVGIKGDPYIFKGMKLQKEIVSAKEYQAALEKWQKEKL
ESNNKYQKELESHVK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=989182 AAFQ93_RS07885 WP_074324191.1 1647705..1649672(-) (amiA3) [Streptococcus nidrosiense strain SO-23-1]
ATGAAAACGAAAAAGTGGATGTTAACAGCAGGAGTGGTCCTGAGTACAGCAGTTCTTCTTGTAGCTTGTGGGAAAGCCGA
CAAGGAAGCAGATGCGCCTACAACTTTCTCTTATGTCTATGGAGTAGACCCATCATCTTTGGACTACAGTATCGCAACTC
GTACTTCAACAACTGATATCATCGGTAACGTTGTTGATGGATTGTTGGAAAACGATGAATATGGGAATTTGATTCCTTCC
CTCGCTGAGGATTGGAGTGTCTCACAAGACGGTTTGACTTATACTTATAAACTTCGCAAAGGGGTTAAATGGTACACGTC
AGAAGGTGAAGAATACGCTGAAGTAACTGCGCATGACTTTGTTACTGGGTTGAAACACGTAGCTGATGGCAAATCAGACG
GTGTCACTCTTATTCAAAACTCAATCAAGGGCTTGAATGAATATATGACTGGTGAGACTAACGACTTCTCAACAGTTGGG
GTTAAGGCAGTAGATGATTATACTGTTGAGTACACTCTAAATGCACCTGAAACTTTCTGGAATTCAAAAGTAACTTCAGC
AACTATGTTGCCAGTAAATGAAGAATTCCTCAAAGCATCAGGTAAGAATTACGGAACGGTCAGCCCAGCTGGTATTCTTT
ATAACGGTCCATATATCTTGAAGACATTGACTTCAAAATCTTTAATCGAATATGAAAAGAACCCAAATTATTGGGATAAA
GAGAAGGTTAAAATCGAGAAAGTTAAATTAACTTACTATGATGGTTCAGACCAAGAATCCTTGATCCGTAGCTTCTCTTC
AGGTGTTTACACAACAGCTCGCCTCTTCCCAAGTAGCTCAAACTTTGCTTCTACTTTGGAACAATACGGAGATAAAATTA
CTTACAGCCCACAAGATTCAACTAGTTACTACTTTACCTTTAACGTAAACCGTCAATCTTTCAATAAGACAGCGAAAACA
AGTGAAGAACAGAAAACTTCTACAAAAGAAGCAATGTTGAACAAGGACTTCCGTCAAGCAATCAATTTTGCCTTCAACCG
TCATTCTTATGCTGCCCAGCTCAATGGTGAAGATGGTGCGGATAAGATTATTCGTAATAGCTTAGTACCAGACAATTTCG
TTCAATCTGGTGGTAAAAACTTTGGTGATATCGCTCAAAAAGAATTGGTCAACTATGGAGACCAATGGAAAGGTGTTGAG
CTCGTTGACGGAAAAGATACCATCTACAATCCTGACAAAGCCAAAGCTTCATTTGAAAAAGCTAAGAAAGAATTGGAAGC
AAAAGGTGTAACCTTCCCAATTCACTTGGATGTTCCAGTTGAGCAAACAGATACAATTGCTGTTCAACAAAGCAATTCCT
TTAAACAATCAATCGAGTCAACACTTGGTTCTGAAAATGTCGTGATCGATGTTCTTCAAATGACTGATAACGAGAAGGAA
AGCATTACATCTCAAGCACGTGTTCCTGCTCAAAAAGACTATGACTTGAACAGTACTGGATGGGCTCCAAGCTACCAAGA
TCCAGCAAGTTATCTCAATATCATGGATCCTAAGACAGGTTCTGCTATGAAACACCTTGGTATCACTAAAGGAAAAGACA
AGGAAGTAGTAGCTCAACTAGGTTTGGACGAATATAAGAAACTCTTGGATGATGCAGTTTCTGAGACAAGCGACTTGGAT
AAGAGATATGAAAAATATGCTAAAGCGCAAGCATGGCTCACTGATAGTTCTCTCTTGATGCCAACAGCTTCATCAGGTGG
TTCACCAGTTGTCAGCAATATTGTTCCTTTCTCTAAACCATACTCACAAGTTGGTATTAAGGGTGATCCATACATCTTCA
AGGGAATGAAATTGCAAAAAGAGATTGTATCTGCGAAAGAATATCAAGCAGCTCTTGAAAAATGGCAAAAAGAAAAATTG
GAATCAAACAATAAATACCAAAAAGAATTAGAAAGTCATGTCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

52.121

100

0.525
  amiA Streptococcus salivarius strain HSISS4

51.672

100

0.519
  amiA3 Streptococcus thermophilus LMG 18311

51.515

100

0.519

Multiple sequence alignment