Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   AAFQ93_RS06060 Genome accession   NZ_CP152419
Coordinates   1275936..1276745 (+) Length   269 a.a.
NCBI ID   WP_045763287.1    Uniprot ID   A0AAJ2T1H3
Organism   Streptococcus nidrosiense strain SO-23-1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1270936..1281745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFQ93_RS06045 (AAFQ93_06030) mutY 1272660..1273823 (+) 1164 WP_375554925.1 A/G-specific adenine glycosylase -
  AAFQ93_RS06050 (AAFQ93_06035) micA 1273888..1274592 (+) 705 WP_000722070.1 response regulator YycF Regulator
  AAFQ93_RS06055 (AAFQ93_06040) micB 1274585..1275934 (+) 1350 WP_223140896.1 cell wall metabolism sensor histidine kinase VicK Regulator
  AAFQ93_RS06060 (AAFQ93_06045) vicX 1275936..1276745 (+) 810 WP_045763287.1 MBL fold metallo-hydrolase Regulator
  AAFQ93_RS06065 (AAFQ93_06050) relB 1276835..1277077 (+) 243 WP_223140897.1 type II toxin-antitoxin system RelB family antitoxin -
  AAFQ93_RS06070 (AAFQ93_06055) - 1277079..1277333 (+) 255 WP_045763285.1 type II toxin-antitoxin system RelE/ParE family toxin -
  AAFQ93_RS06075 (AAFQ93_06060) - 1277386..1278159 (+) 774 WP_223140898.1 potassium channel family protein -
  AAFQ93_RS06080 (AAFQ93_06065) - 1278296..1278643 (-) 348 WP_049508487.1 thiol reductase thioredoxin -
  AAFQ93_RS06085 (AAFQ93_06070) - 1278883..1280601 (-) 1719 WP_375554926.1 phospho-sugar mutase -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29932.86 Da        Isoelectric Point: 5.9877

>NTDB_id=989178 AAFQ93_RS06060 WP_045763287.1 1275936..1276745(+) (vicX) [Streptococcus nidrosiense strain SO-23-1]
MSDIGFKYSILASGSSGNSFYLETPKKKILVDAGLSGKKITSLLSEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVMLTDTGYVSDRMAG
IVENADGYLIESNHDVEILRAGSYAWRLKQRILSDLGHLSNEDGADAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFQVYDTSPDTATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=989178 AAFQ93_RS06060 WP_045763287.1 1275936..1276745(+) (vicX) [Streptococcus nidrosiense strain SO-23-1]
ATGAGTGATATCGGTTTTAAATACAGTATTTTAGCATCGGGTTCCAGTGGAAATTCATTTTACTTGGAAACACCAAAAAA
GAAAATTTTAGTAGATGCGGGCCTATCTGGCAAAAAAATTACAAGCCTTTTGAGTGAAATCAATCGTAAACCAGAGGATT
TAGACGCTATCTTGATTACGCATGAACATTCAGACCATATCCACGGTGTGGGCGTTCTGGCTCGTAAGTACGGCATGGAT
CTTTATGCCAATGAGAAAACCTGGCAGGCTATGGAAAATAGTAAGTATCTTGGTAAGGTTGACTCGTCGCAAAAGCATAT
TTTCGAGATGGGAAAAACTAAAACATTTGGCGACATCGATATTGAGAGCTTTGGTGTGAGTCATGATGCAGTTGCGCCCC
AGTTCTATCGTTTTATGAAGGATGATAAGAGCTTTGTTATGTTGACGGATACGGGATATGTTAGTGACCGTATGGCTGGC
ATTGTCGAGAATGCAGATGGCTATCTAATCGAGTCAAATCATGATGTGGAAATCCTGCGAGCAGGATCTTACGCATGGCG
ACTCAAACAACGCATCCTGTCTGACCTTGGTCACCTTTCAAATGAAGATGGAGCAGATGCTATGATTCGCACACTAGGTA
ATCGTACCAAGAAGATTTACCTAGGCCATTTGTCTAAGGAAAATAATATCAAGGAGCTGGCCCACATGACCATGGTCAAT
CAGTTAGCTCAGGCAGATCTGGGAGTTGGAGTAGACTTTCAAGTTTACGATACTTCACCAGATACCGCAACACCATTGAC
GGAGATATAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.58

100

0.766

Multiple sequence alignment