Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   AAGF34_RS11690 Genome accession   NZ_CP152376
Coordinates   2488430..2488828 (+) Length   132 a.a.
NCBI ID   WP_342620771.1    Uniprot ID   -
Organism   Rhodoferax sp. GW822-FHT02A01     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2483430..2493828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAGF34_RS11660 (AAGF34_11660) - 2484097..2484879 (-) 783 WP_342620766.1 SDR family NAD(P)-dependent oxidoreductase -
  AAGF34_RS11665 (AAGF34_11665) - 2484994..2485212 (-) 219 WP_342620767.1 hypothetical protein -
  AAGF34_RS11670 (AAGF34_11670) - 2485226..2485828 (-) 603 WP_342620768.1 hypothetical protein -
  AAGF34_RS11675 (AAGF34_11675) hemL 2485848..2487143 (-) 1296 WP_342620769.1 glutamate-1-semialdehyde 2,1-aminomutase -
  AAGF34_RS11680 (AAGF34_11680) - 2487157..2488068 (-) 912 WP_342620770.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  AAGF34_RS11685 (AAGF34_11685) - 2488211..2488363 (+) 153 WP_342621084.1 rubredoxin -
  AAGF34_RS11690 (AAGF34_11690) pilG 2488430..2488828 (+) 399 WP_342620771.1 response regulator Regulator
  AAGF34_RS11695 (AAGF34_11695) - 2488828..2489193 (+) 366 WP_342620772.1 response regulator -
  AAGF34_RS11700 (AAGF34_11700) - 2489202..2489735 (+) 534 WP_342620773.1 chemotaxis protein CheW -
  AAGF34_RS11705 (AAGF34_11705) - 2489747..2491954 (+) 2208 WP_342620774.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14442.59 Da        Isoelectric Point: 5.8489

>NTDB_id=988745 AAGF34_RS11690 WP_342620771.1 2488430..2488828(+) (pilG) [Rhodoferax sp. GW822-FHT02A01]
MSTQDTALKVLVVDDSNTIRRSAEIFLKQGGHEVLLAEDGFDALSKVNDYQPDLIFCDILMPRLDGYQTCAIIKRNAKFS
GVPVVMLSSKDGVFDKARGRMAGAQDYLTKPFSKEQLLQAVQQFGAAVQGVA

Nucleotide


Download         Length: 399 bp        

>NTDB_id=988745 AAGF34_RS11690 WP_342620771.1 2488430..2488828(+) (pilG) [Rhodoferax sp. GW822-FHT02A01]
GTGAGTACCCAAGATACGGCATTGAAAGTGCTGGTGGTGGACGATAGCAACACCATACGGCGCAGTGCGGAAATTTTTCT
CAAGCAGGGCGGTCATGAGGTCCTGTTGGCAGAAGACGGATTTGATGCCCTCTCCAAGGTCAATGATTACCAGCCAGATC
TGATTTTTTGCGACATCCTGATGCCGCGCCTGGATGGTTACCAGACCTGCGCCATCATCAAGCGCAATGCCAAGTTTTCC
GGCGTTCCGGTGGTCATGCTGTCTTCCAAGGATGGCGTCTTCGACAAGGCGCGCGGTCGTATGGCCGGCGCCCAGGACTA
CCTGACCAAACCCTTTTCCAAAGAGCAGTTGCTGCAGGCCGTGCAGCAGTTTGGTGCTGCCGTGCAGGGAGTTGCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

59.483

87.879

0.523
  vicR Streptococcus mutans UA159

42.982

86.364

0.371
  pilH Synechocystis sp. PCC 6803

41.739

87.121

0.364

Multiple sequence alignment