Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   WN937_RS14865 Genome accession   NZ_CP152363
Coordinates   3131441..3132034 (-) Length   197 a.a.
NCBI ID   WP_005496571.1    Uniprot ID   A0A0F2HLP7
Organism   Vibrio parahaemolyticus strain vp-HL-201910     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3126441..3137034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WN937_RS14845 (WN937_14845) aroB 3127317..3128417 (-) 1101 WP_069535786.1 3-dehydroquinate synthase -
  WN937_RS14850 (WN937_14850) aroK 3128449..3128967 (-) 519 WP_005381319.1 shikimate kinase AroK -
  WN937_RS14855 (WN937_14855) pilQ 3129156..3130904 (-) 1749 WP_005488227.1 type IV pilus secretin PilQ family protein Machinery gene
  WN937_RS14860 (WN937_14860) pilP 3130936..3131451 (-) 516 WP_005454781.1 pilus assembly protein PilP Machinery gene
  WN937_RS14865 (WN937_14865) pilO 3131441..3132034 (-) 594 WP_005496571.1 type 4a pilus biogenesis protein PilO Machinery gene
  WN937_RS14870 (WN937_14870) pilN 3132027..3132605 (-) 579 WP_015297396.1 PilN domain-containing protein Machinery gene
  WN937_RS14875 (WN937_14875) pilM 3132589..3133605 (-) 1017 WP_031821574.1 type IV pilus assembly protein PilM Machinery gene
  WN937_RS14880 (WN937_14880) - 3133748..3136318 (+) 2571 WP_069535787.1 PBP1A family penicillin-binding protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 23019.57 Da        Isoelectric Point: 4.9419

>NTDB_id=988685 WN937_RS14865 WP_005496571.1 3131441..3132034(-) (pilO) [Vibrio parahaemolyticus strain vp-HL-201910]
MVNWQDLEMDEIAEWPLLPQLVVICLLVLLIQGFGYWFYLKPEEARLNNLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSENFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEEKKDGK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=988685 WN937_RS14865 WP_005496571.1 3131441..3132034(-) (pilO) [Vibrio parahaemolyticus strain vp-HL-201910]
ATGGTTAATTGGCAAGATCTAGAAATGGATGAGATTGCTGAATGGCCATTACTGCCTCAGCTTGTAGTGATCTGCCTGCT
TGTTCTTCTTATCCAAGGGTTTGGTTATTGGTTTTACTTAAAGCCAGAAGAGGCTCGCTTGAACAATTTGATTCAAGAGG
AGCAAACATTAAAAGTGGCATTGCGCATAAAAGCCAACAAGGTGGCTGCATTGCCTCAATTGCAATCTCAACTGGACGAG
CTCACTACGCGTTATGAGTTGCTGTTGCAACAACTACCGGCACAAAAAGAGTTGGCCACAATGTTGGCGTCGGTAAACGA
ACTCGGTATCGACAACAAGTTAACGTTTACTCGAATCGATTGGGGAGAAAAGCAATCTGAAAACTTCCTGTATCGATTGC
CACTAAATATCGAGCTAACAGGTGATTTCCACGATATCGGTCGTTTTTCACAGGCCATTGCCACACTGCCACGCATCATC
ACCTTTAAAGACGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTTTGCACTTCCGAGTGAGAGCAAACACTTATCA
GTTCAAGCCTGAGGAAAAGAAAGATGGGAAATAA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilO (PilO)

(47-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Vibrio campbellii strain DS40M4

94.211

96.447

0.909
  pilO Vibrio cholerae strain A1552

73.298

96.954

0.711

Multiple sequence alignment