Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   WN937_RS04835 Genome accession   NZ_CP152363
Coordinates   1022817..1025075 (+) Length   752 a.a.
NCBI ID   WP_069537370.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain vp-HL-201910     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1020140..1044727 1022817..1025075 within 0


Gene organization within MGE regions


Location: 1020140..1044727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WN937_RS04820 (WN937_04820) lolD 1020140..1020847 (+) 708 WP_069537373.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  WN937_RS04825 (WN937_04825) lolE 1020850..1022094 (+) 1245 WP_015296461.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  WN937_RS04830 (WN937_04830) - 1022299..1022808 (-) 510 WP_005456245.1 DUF2062 domain-containing protein -
  WN937_RS04835 (WN937_04835) comEC 1022817..1025075 (+) 2259 WP_069537370.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  WN937_RS04840 (WN937_04840) msbA 1025107..1026855 (+) 1749 WP_015296464.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  WN937_RS04845 (WN937_04845) lpxK 1026861..1027868 (+) 1008 WP_021449340.1 tetraacyldisaccharide 4'-kinase -
  WN937_RS04850 (WN937_04850) - 1027849..1028028 (+) 180 WP_005378451.1 Trm112 family protein -
  WN937_RS04855 (WN937_04855) kdsB 1028028..1028783 (+) 756 WP_023585388.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  WN937_RS04860 (WN937_04860) - 1028861..1030420 (-) 1560 WP_005456192.1 SpoVR family protein -
  WN937_RS04865 (WN937_04865) - 1030432..1031703 (-) 1272 WP_005481863.1 YeaH/YhbH family protein -
  WN937_RS04870 (WN937_04870) - 1031751..1033685 (-) 1935 WP_005456210.1 PrkA family serine protein kinase -
  WN937_RS04875 (WN937_04875) - 1034174..1034674 (-) 501 WP_005456271.1 YfbU family protein -
  WN937_RS04880 (WN937_04880) - 1034829..1035497 (-) 669 WP_005495910.1 energy-coupling factor ABC transporter permease -
  WN937_RS04885 (WN937_04885) pflA 1035658..1036398 (-) 741 WP_005456250.1 pyruvate formate lyase 1-activating protein -
  WN937_RS04890 (WN937_04890) - 1036545..1037522 (-) 978 WP_005481800.1 lipid A deacylase LpxR family protein -
  WN937_RS04895 (WN937_04895) pflB 1037675..1039951 (-) 2277 WP_005456189.1 formate C-acetyltransferase -
  WN937_RS04900 (WN937_04900) - 1040258..1041805 (-) 1548 WP_005456280.1 DUF3360 family protein -
  WN937_RS04905 (WN937_04905) - 1042262..1043722 (+) 1461 WP_047724467.1 flagellar sheath protein A -
  WN937_RS04910 (WN937_04910) - 1043957..1044727 (+) 771 WP_005456207.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 752 a.a.        Molecular weight: 84681.25 Da        Isoelectric Point: 9.5080

>NTDB_id=988661 WN937_RS04835 WP_069537370.1 1022817..1025075(+) (comEC) [Vibrio parahaemolyticus strain vp-HL-201910]
MTLLEKSWTLALFVASVISSAWWPTMPDWRWLLLGIITTGSIIKLRRGLISIGVIVGFMVVIVHGNIMEYQRQALFQAGE
NSTIIGRVDSSFTQISHGYEGVVAIKQVNSHTLLPFLKPKVRLITPFPLAVNSEFTTNVLIKPIIGLRNEAGFDAEKQSM
GSGVVARAVVTKDSYWVIRTSSSWREAIIQTVERDIFRLEHFALIKALAFADRTGLTKEDWQSLRDSGLLHLVSISGLHI
GMALTFGLALGGLIRLAMPRYWFLPSVSGLAFAIVYAWLADFSLPTTRAVSVCIIYLALKYWLVHWSPWRVLLLAVALQL
FFQPFASFSLSFWLSYLSVGAVLFAVNTVQDSKEGRLGKLRILLLTQLILSLLIVPISGYFFSGFSWSSLVYNLVFIPWF
GFVVVPIMFAALIASLLFPMLATVLWCLLDVFLVPLSWSVRYAIGTWQPISTEWTFVIAVVSAVLVLRHVMPRYVWMFVC
VIVVMTGLLPKQYNQTWRIDVLDVGHGLAVLVEKEGRVLLYDTGKAWQNGSIAEQVITPVLHRRGYSSVDTMILSHADND
HAGGRKVIEQYFSPKHKLSSQSFLHYQPCIAAEKWKWQGLNMEVLWPPKPVVRAYNPHSCVISLEDPSSGFKMLFTGDIE
AISEWILLREPEKLRSDVMLVPHHGSKSSSNLKFINAVEPSLAIASTAKLNQWGMPAPEVVQAYTDSGVSWLDTGSDGQI
TILLDGNNWRFESKRRETIEPWYRQMLRNRVE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=988661 WN937_RS04835 WP_069537370.1 1022817..1025075(+) (comEC) [Vibrio parahaemolyticus strain vp-HL-201910]
ATGACTCTCTTAGAAAAAAGTTGGACCTTGGCGTTATTTGTCGCGAGCGTAATTTCGTCTGCATGGTGGCCGACGATGCC
GGATTGGCGTTGGTTGCTGCTGGGAATAATTACCACTGGCTCAATAATTAAATTACGTCGAGGCTTAATTAGCATAGGCG
TAATTGTGGGCTTTATGGTTGTCATCGTCCATGGCAATATTATGGAGTATCAGAGACAAGCCCTTTTTCAAGCAGGTGAG
AATAGTACCATAATTGGTAGAGTTGACAGCTCTTTTACGCAAATAAGTCACGGATATGAAGGTGTCGTAGCGATAAAACA
AGTGAATTCTCACACTCTGTTACCTTTTCTTAAACCTAAAGTCCGCCTTATAACGCCATTCCCACTAGCTGTTAACAGTG
AGTTTACGACTAACGTTTTGATTAAGCCCATTATCGGCCTCAGAAATGAAGCGGGTTTCGACGCAGAGAAGCAGTCAATG
GGAAGTGGTGTTGTTGCAAGGGCGGTCGTAACTAAAGATTCATACTGGGTCATTCGTACTTCTTCGTCTTGGCGCGAAGC
TATTATTCAAACTGTTGAGCGTGATATTTTTCGCCTTGAGCATTTTGCTCTAATTAAAGCACTGGCTTTTGCTGATCGCA
CTGGGCTTACCAAAGAGGATTGGCAGTCTCTGCGTGACAGCGGACTACTGCATCTTGTATCAATTTCTGGTCTACACATT
GGGATGGCATTGACGTTTGGGCTCGCCCTTGGTGGGCTTATTCGGCTTGCTATGCCGCGATATTGGTTTCTGCCATCAGT
GAGTGGGTTGGCGTTTGCCATTGTTTACGCTTGGCTTGCTGATTTTTCTTTGCCGACGACCCGAGCCGTTTCTGTTTGTA
TCATCTATCTTGCTTTGAAGTATTGGCTTGTTCATTGGAGTCCATGGCGCGTACTGTTATTGGCTGTGGCGTTGCAACTT
TTCTTCCAACCTTTTGCTTCTTTTAGTTTGAGTTTTTGGCTGTCTTATTTATCCGTTGGTGCCGTTTTGTTTGCGGTTAA
CACAGTGCAAGACTCGAAGGAAGGTCGTTTGGGAAAGTTGCGGATACTTCTGTTGACTCAACTGATACTGAGCTTATTGA
TTGTCCCGATCAGTGGCTATTTTTTCTCTGGATTTAGCTGGTCTTCTTTAGTCTACAATTTGGTTTTCATTCCTTGGTTT
GGCTTTGTTGTCGTTCCAATCATGTTTGCTGCTTTAATTGCGTCATTGCTCTTTCCTATGTTGGCGACGGTTCTATGGTG
CTTGCTTGACGTGTTCCTTGTACCACTAAGTTGGTCGGTTCGATATGCCATAGGAACTTGGCAACCCATTAGTACCGAGT
GGACATTTGTTATTGCTGTAGTGAGTGCCGTGCTCGTTTTAAGACATGTTATGCCTCGTTACGTTTGGATGTTTGTCTGT
GTAATTGTTGTGATGACCGGGTTGCTTCCTAAGCAATATAACCAAACTTGGCGTATTGATGTACTTGATGTCGGGCATGG
GTTGGCGGTACTGGTTGAAAAAGAGGGTAGAGTTTTACTCTATGATACGGGCAAGGCTTGGCAAAACGGCAGTATAGCTG
AGCAAGTGATTACGCCAGTACTGCACCGCAGAGGTTACTCAAGTGTCGATACGATGATTTTAAGTCATGCCGATAATGAC
CATGCTGGCGGCCGAAAAGTGATAGAGCAGTACTTTTCACCTAAACACAAACTAAGCAGCCAGAGCTTTTTACATTATCA
GCCTTGTATTGCTGCTGAGAAATGGAAGTGGCAAGGGTTGAACATGGAGGTACTTTGGCCTCCTAAACCTGTTGTACGTG
CATACAACCCCCACTCTTGTGTCATCAGTCTGGAAGACCCTAGTTCAGGTTTTAAAATGTTGTTCACTGGTGATATCGAA
GCCATCAGCGAATGGATACTGCTTCGAGAGCCAGAAAAGCTGCGCAGTGATGTAATGCTAGTGCCGCATCATGGAAGCAA
AAGCTCTTCTAACCTTAAGTTTATCAATGCTGTTGAGCCTAGCTTGGCTATTGCTTCAACGGCAAAACTAAACCAGTGGG
GAATGCCCGCACCTGAAGTCGTTCAAGCCTATACCGATAGTGGTGTTAGTTGGTTAGACACTGGAAGTGATGGCCAAATA
ACAATCTTACTTGATGGCAATAACTGGCGTTTTGAAAGTAAACGTCGTGAGACAATTGAGCCTTGGTATAGGCAGATGCT
GCGTAACCGAGTAGAATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(504-679)

Competence protein (Competence)

(208-466)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio parahaemolyticus RIMD 2210633

98.67

100

0.987
  comEC Vibrio campbellii strain DS40M4

66.888

100

0.669
  comEC Vibrio cholerae strain A1552

41.347

100

0.416

Multiple sequence alignment