Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   AAC934_RS16285 Genome accession   NZ_CP152362
Coordinates   3144872..3145516 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain LP     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3139872..3150516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAC934_RS16250 (AAC934_16250) mrpB 3141064..3141495 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  AAC934_RS16255 (AAC934_16255) mrpC 3141495..3141836 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  AAC934_RS16260 (AAC934_16260) mrpD 3141829..3143310 (+) 1482 WP_019712488.1 Na+/H+ antiporter subunit D -
  AAC934_RS16265 (AAC934_16265) mrpE 3143316..3143792 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  AAC934_RS16270 (AAC934_16270) mrpF 3143792..3144076 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  AAC934_RS16275 (AAC934_16275) mnhG 3144060..3144434 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  AAC934_RS16280 (AAC934_16280) yuxO 3144473..3144853 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  AAC934_RS16285 (AAC934_16285) comA 3144872..3145516 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  AAC934_RS16290 (AAC934_16290) comP 3145597..3147816 (-) 2220 WP_342623517.1 histidine kinase Regulator
  AAC934_RS16295 (AAC934_16295) comX 3147832..3148053 (-) 222 WP_014114983.1 competence pheromone ComX -
  AAC934_RS16300 (AAC934_16300) - 3148050..3148919 (-) 870 WP_277736668.1 polyprenyl synthetase family protein -
  AAC934_RS16305 (AAC934_16305) degQ 3149104..3149244 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  AAC934_RS16310 (AAC934_16310) - 3149466..3149591 (+) 126 WP_003228793.1 hypothetical protein -
  AAC934_RS16315 (AAC934_16315) - 3149705..3150073 (+) 369 WP_014477834.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=988636 AAC934_RS16285 WP_003220716.1 3144872..3145516(-) (comA) [Bacillus subtilis strain LP]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=988636 AAC934_RS16285 WP_003220716.1 3144872..3145516(-) (comA) [Bacillus subtilis strain LP]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment