Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   AAG685_RS07490 Genome accession   NZ_CP152345
Coordinates   1673936..1675528 (-) Length   530 a.a.
NCBI ID   WP_406668446.1    Uniprot ID   -
Organism   Pseudomonas indoloxydans strain SDU_PSEU1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1668936..1680528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG685_RS07455 - 1669044..1669766 (-) 723 WP_406668440.1 PilW family protein -
  AAG685_RS07460 - 1669766..1670002 (-) 237 WP_406668441.1 hypothetical protein -
  AAG685_RS07465 pilV 1669999..1670286 (-) 288 WP_406668442.1 type IV pilus modification protein PilV -
  AAG685_RS07470 - 1670283..1670816 (-) 534 WP_406668443.1 GspH/FimT family pseudopilin -
  AAG685_RS07475 - 1670871..1671512 (-) 642 WP_406668444.1 GspH/FimT family pseudopilin -
  AAG685_RS07480 thiO 1671466..1672562 (+) 1097 Protein_1482 glycine oxidase ThiO -
  AAG685_RS07485 pilR 1672593..1673933 (-) 1341 WP_406668445.1 sigma-54-dependent transcriptional regulator Regulator
  AAG685_RS07490 pilS 1673936..1675528 (-) 1593 WP_406668446.1 sensor histidine kinase Regulator
  AAG685_RS07495 - 1675518..1675760 (-) 243 WP_406668447.1 PP0621 family protein -
  AAG685_RS07500 - 1676124..1677116 (-) 993 WP_406668448.1 outer membrane protein assembly factor BamD -
  AAG685_RS07505 rluD 1677410..1678384 (+) 975 WP_119695394.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AAG685_RS07510 pgeF 1678381..1679112 (+) 732 WP_406668449.1 peptidoglycan editing factor PgeF -
  AAG685_RS07515 - 1679246..1679836 (+) 591 WP_406668450.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 59096.28 Da        Isoelectric Point: 8.1902

>NTDB_id=988528 AAG685_RS07490 WP_406668446.1 1673936..1675528(-) (pilS) [Pseudomonas indoloxydans strain SDU_PSEU1]
MIAESSVQDSKQGQRILRLYHFYRLSIGLALILLISSNLDEQLLDVVHIELFRTGSWAYLILNILIAVLVQKPKHLMQLF
SLALVDVIFLSALFYAAGGTPSGIGNLLVVAVAIANILLRGRIGLLIAAIAAMALIYLTFYLSLSRPAAAAQYVQAGALG
ALCFAGALFIQGITRRLQMSENLAEQRAADVANLEELNEQILQRMRTGILVLDTQHRVLLANQGATQLLGRSELSGKIID
PHCPELVKRLQQWLHNPTLRPDSLQVQVDGPVLQPSFISLQRGDQQHTLVFLDDISQIAQQAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLQESEDLQGPDQRLAQIIQDHSKRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFASEFRSSAPSD
RQIHLETQGGSLQTRMDPHQLTQVLTNLVQNGLRYSAQKHRLGQVWLRLFRDATSDLPVLEILDDGPGVPPELEQHIFEP
FYTTENKGTGLGLYISRELCQSNQARLDYKPREGGGSCFRITFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=988528 AAG685_RS07490 WP_406668446.1 1673936..1675528(-) (pilS) [Pseudomonas indoloxydans strain SDU_PSEU1]
GTGATCGCTGAGAGCAGCGTACAGGACAGCAAGCAGGGTCAGCGCATCCTCAGGCTCTACCACTTCTATCGCCTGAGCAT
CGGACTGGCGCTGATCCTGCTGATCTCCAGCAACCTCGACGAACAGCTGCTCGATGTGGTGCACATCGAGCTGTTTCGCA
CCGGCAGTTGGGCTTACCTGATCCTCAACATCCTCATCGCCGTGCTGGTGCAGAAGCCCAAGCACCTGATGCAGCTGTTC
AGCCTGGCGCTGGTTGACGTGATCTTCCTCTCGGCCCTGTTCTACGCAGCCGGCGGCACGCCCAGCGGGATAGGCAACCT
GCTGGTGGTCGCCGTGGCCATCGCCAATATCCTGCTGCGGGGACGCATCGGTCTGCTGATCGCCGCCATCGCCGCCATGG
CATTGATCTACCTGACCTTCTACCTGAGCCTCAGCCGCCCCGCCGCTGCCGCCCAGTACGTCCAGGCCGGCGCCCTCGGT
GCGCTGTGCTTCGCCGGCGCCCTGTTCATCCAGGGCATTACCCGCCGCCTGCAGATGAGCGAGAACCTGGCCGAACAACG
CGCGGCCGACGTGGCCAATCTGGAAGAGCTCAACGAACAGATCCTGCAGCGCATGCGCACCGGCATTCTCGTCCTCGATA
CCCAGCATCGCGTGCTGCTGGCCAACCAGGGGGCGACGCAATTGCTGGGGCGCAGCGAACTCAGCGGCAAGATCATCGAC
CCGCACTGCCCCGAACTGGTCAAGCGCCTGCAGCAGTGGCTGCACAACCCCACCCTGCGCCCGGACAGTCTGCAGGTGCA
GGTCGACGGCCCGGTGCTGCAACCCAGCTTCATCTCGCTGCAACGCGGTGACCAGCAGCACACCCTGGTATTTCTCGATG
ACATCTCGCAGATCGCCCAGCAGGCGCAGCAGCTCAAGCTGGCCTCGCTCGGCCGCCTGACCGCCGGCATCGCCCACGAG
ATACGCAACCCGCTGGGCGCCATCAGCCACGCCGCGCAACTGCTGCAGGAGTCGGAAGACCTGCAAGGCCCGGATCAGCG
CCTGGCGCAGATCATCCAGGATCACTCAAAACGCATGAACCTGGTGATCGAGAACGTGCTGCAACTGTCACGCAGACGCC
AGGCCGAACCGCAGTTGCTCGACCTGAAGTACTGGCTGCACCGGTTCGCCAGCGAATTCCGCAGCTCGGCACCGAGCGAC
CGACAGATTCACCTGGAGACCCAGGGCGGCAGCCTGCAAACGCGCATGGATCCACACCAGCTGACCCAGGTGCTGACCAA
CCTGGTGCAGAATGGCCTGCGCTACAGTGCGCAGAAACACCGGCTCGGGCAGGTATGGCTGCGCCTGTTCCGCGACGCCA
CCAGCGATCTGCCGGTGCTGGAGATTCTCGATGACGGCCCCGGTGTGCCGCCCGAGCTGGAACAGCACATCTTCGAGCCC
TTCTATACCACCGAGAACAAGGGCACCGGCCTCGGCCTGTATATCTCCCGCGAGCTGTGCCAGAGCAACCAGGCACGTCT
GGACTATAAACCTCGTGAGGGTGGTGGCAGTTGCTTCCGCATCACCTTCGCCCATCCGCGCAAACTGAGCTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

PAS domain (PAS_8)

(199-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

67.547

100

0.675

Multiple sequence alignment