Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   AAG685_RS07485 Genome accession   NZ_CP152345
Coordinates   1672593..1673933 (-) Length   446 a.a.
NCBI ID   WP_406668445.1    Uniprot ID   -
Organism   Pseudomonas indoloxydans strain SDU_PSEU1     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1667593..1678933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG685_RS07450 - 1668493..1669047 (-) 555 WP_406668439.1 PilX N-terminal domain-containing pilus assembly protein -
  AAG685_RS07455 - 1669044..1669766 (-) 723 WP_406668440.1 PilW family protein -
  AAG685_RS07460 - 1669766..1670002 (-) 237 WP_406668441.1 hypothetical protein -
  AAG685_RS07465 pilV 1669999..1670286 (-) 288 WP_406668442.1 type IV pilus modification protein PilV -
  AAG685_RS07470 - 1670283..1670816 (-) 534 WP_406668443.1 GspH/FimT family pseudopilin -
  AAG685_RS07475 - 1670871..1671512 (-) 642 WP_406668444.1 GspH/FimT family pseudopilin -
  AAG685_RS07480 thiO 1671466..1672562 (+) 1097 Protein_1482 glycine oxidase ThiO -
  AAG685_RS07485 pilR 1672593..1673933 (-) 1341 WP_406668445.1 sigma-54-dependent transcriptional regulator Regulator
  AAG685_RS07490 pilS 1673936..1675528 (-) 1593 WP_406668446.1 sensor histidine kinase Regulator
  AAG685_RS07495 - 1675518..1675760 (-) 243 WP_406668447.1 PP0621 family protein -
  AAG685_RS07500 - 1676124..1677116 (-) 993 WP_406668448.1 outer membrane protein assembly factor BamD -
  AAG685_RS07505 rluD 1677410..1678384 (+) 975 WP_119695394.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49935.25 Da        Isoelectric Point: 5.8229

>NTDB_id=988527 AAG685_RS07485 WP_406668445.1 1672593..1673933(-) (pilR) [Pseudomonas indoloxydans strain SDU_PSEU1]
MNRQRALIVDDEPDIRELLEITLGRMKLDTRSARNVKEAREWLAREPFDLCLTDMRLPDGTGLDLVQHIQQRHPQVPVAM
ITAYGSLDTAINSLKAGAFDFLTKPVDLGRLRELVSTALRMRSPEGEETPVDSRLLGDSPPMKALRKQIQKLSRSQAPVY
ISGESGSGKELVARLIHEQGPRIEQPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAANGGTLFLDEVADLP
LPMQVKLLRAIQEKAVRAVGGQQEVVVDVRILCATHKDLAAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIAQLAEVM
LARLAEGTGLAAASLHPDALEKLKNYRFPGNVRELENMLERAYTLCEDDRITPGDLRLADSGNPGKENGEASLAQIDNLE
DYLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=988527 AAG685_RS07485 WP_406668445.1 1672593..1673933(-) (pilR) [Pseudomonas indoloxydans strain SDU_PSEU1]
ATGAACCGCCAGAGAGCCCTGATCGTCGACGACGAACCCGATATCCGCGAGTTGCTGGAAATCACCCTCGGCCGGATGAA
ACTGGACACCCGCAGTGCGCGCAACGTCAAGGAAGCGCGCGAGTGGCTGGCGCGCGAGCCCTTCGACCTGTGCCTGACCG
ACATGCGTCTGCCCGACGGCACCGGCCTGGATCTGGTGCAGCATATCCAGCAGCGCCACCCGCAGGTTCCGGTGGCGATG
ATCACCGCCTACGGCAGCCTGGATACCGCGATCAACTCGCTCAAGGCCGGCGCCTTCGACTTCCTGACCAAACCGGTGGA
TCTGGGCCGCCTGCGCGAGCTGGTGAGCACCGCCCTGCGCATGCGCTCGCCGGAAGGCGAGGAAACCCCGGTCGACAGCC
GCCTGCTCGGCGACTCGCCGCCCATGAAGGCGCTGCGCAAGCAGATACAGAAACTCTCGCGCAGCCAGGCTCCGGTCTAT
ATCAGCGGCGAATCGGGCAGCGGCAAGGAACTGGTCGCCCGCCTGATCCACGAACAGGGCCCACGAATCGAGCAGCCCTT
CGTACCGGTGAACTGCGGCGCCATTCCCTCAGAACTGATGGAGAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACCG
GTGCCATCGAAGACAAGCAGGGCCTGTTCCAGGCGGCCAATGGCGGCACGCTGTTCCTCGACGAGGTGGCTGATCTGCCG
CTGCCGATGCAGGTCAAGCTGCTGCGTGCGATTCAGGAAAAAGCCGTGCGCGCCGTCGGTGGTCAGCAGGAGGTGGTGGT
CGACGTACGCATCCTCTGCGCAACCCACAAGGATCTCGCCGCCGAAGTCGCCGCCGGCCGTTTCCGCCAGGATCTCTACT
ACCGTCTCAACGTCATCGAACTGCGCGTGCCACCGCTACGCGAACGCCGCGAAGATATCGCCCAGTTGGCCGAGGTGATG
CTCGCGCGCCTGGCCGAGGGCACTGGCCTGGCTGCCGCCAGCCTGCATCCCGACGCTCTGGAAAAGTTGAAGAACTACCG
TTTCCCGGGCAACGTGCGCGAGTTGGAGAACATGCTCGAGCGCGCCTACACCCTCTGCGAAGACGACCGGATCACCCCCG
GCGATCTGCGCCTGGCCGACTCCGGCAACCCCGGCAAGGAAAACGGCGAAGCCAGCCTGGCGCAGATCGACAACCTCGAG
GACTACCTCGAGGACATCGAACGCAAGCTGATCATGCAGGCCCTGGAAGAGACCCGCTGGAACCGCACGGCGGCGGCCCA
GCGCCTGGGTCTCACCTTCCGCTCGATGCGCTATCGGCTGAAGAAACTGGGAATCGATTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Response regulator receiver domain (Response_reg)

(7-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

88.789

100

0.888
  pilR Acinetobacter baumannii strain A118

49.348

100

0.509

Multiple sequence alignment