Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   AAG685_RS03800 Genome accession   NZ_CP152345
Coordinates   862924..863331 (+) Length   135 a.a.
NCBI ID   WP_406669372.1    Uniprot ID   -
Organism   Pseudomonas indoloxydans strain SDU_PSEU1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 857924..868331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG685_RS03775 pyrR 858893..859396 (-) 504 WP_406667573.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  AAG685_RS03780 ruvX 859543..859980 (-) 438 WP_406669371.1 Holliday junction resolvase RuvX -
  AAG685_RS03785 - 859977..860546 (-) 570 WP_406667575.1 YqgE/AlgH family protein -
  AAG685_RS03790 - 860742..861638 (-) 897 WP_406667577.1 TonB family protein -
  AAG685_RS03795 gshB 861726..862682 (-) 957 WP_406667578.1 glutathione synthase -
  AAG685_RS03800 pilG 862924..863331 (+) 408 WP_406669372.1 twitching motility response regulator PilG Regulator
  AAG685_RS03805 pilH 863378..863743 (+) 366 WP_013713612.1 twitching motility response regulator PilH -
  AAG685_RS03810 - 863789..864327 (+) 539 Protein_753 chemotaxis protein CheW -
  AAG685_RS03815 - 864409..866445 (+) 2037 WP_406667581.1 methyl-accepting chemotaxis protein -
  AAG685_RS03820 - 866506..867366 (+) 861 WP_406669373.1 protein-glutamate O-methyltransferase -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14815.19 Da        Isoelectric Point: 6.7128

>NTDB_id=988526 AAG685_RS03800 WP_406669372.1 862924..863331(+) (pilG) [Pseudomonas indoloxydans strain SDU_PSEU1]
MEQHSEGLKVMVIDDSKTIRRTAETLLKKVGCEVITAVDGFDALAKIADTHPSIIFVDIMMPRLDGYQTCALIKNNSAFK
STPVIMLSSKDGLFDKAKGRIVGSDQYLTKPFSKEELLGAIKTHVPDFTPVEQAS

Nucleotide


Download         Length: 408 bp        

>NTDB_id=988526 AAG685_RS03800 WP_406669372.1 862924..863331(+) (pilG) [Pseudomonas indoloxydans strain SDU_PSEU1]
ATGGAACAGCATTCCGAGGGTTTGAAAGTGATGGTGATCGACGATTCGAAAACGATTCGTCGCACCGCGGAAACTCTGCT
GAAAAAAGTGGGTTGCGAGGTCATCACCGCGGTCGATGGCTTCGATGCCCTGGCCAAGATTGCCGACACTCACCCCAGCA
TCATCTTTGTCGACATCATGATGCCGCGTCTCGATGGATATCAGACCTGTGCCCTGATCAAGAACAACAGCGCTTTCAAA
TCCACTCCGGTGATCATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGGCGCATCGTCGGTTCCGATCAATA
TCTGACCAAGCCTTTCAGCAAGGAAGAGTTGCTCGGTGCGATCAAAACCCACGTGCCTGACTTCACTCCGGTGGAACAAG
CCTCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

76.8

92.593

0.711
  vicR Streptococcus mutans UA159

41.27

93.333

0.385

Multiple sequence alignment