Detailed information NTG0988459

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: AAG563_RS02045
• Genome accession: NZ_CP152341
• Coordinates: 444349..446580 (+)
• Length: 743 a.a.
• NCBI ID: WP_009042836.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain NCIMB_15121
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 439349..451580

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAG563_RS02020 (AAG563_02020)	-	440470..441129 (+)	660	WP_009042834.1	transglutaminase family protein	-
AAG563_RS02025 (AAG563_02025)	-	441172..441795 (+)	624	WP_009042835.1	glutathione S-transferase	-
AAG563_RS02030 (AAG563_02030)	-	441928..442860 (+)	933	WP_007931649.1	ABC transporter ATP-binding protein	-
AAG563_RS02035 (AAG563_02035)	-	442857..443636 (+)	780	WP_007931651.1	ABC transporter permease	-
AAG563_RS02040 (AAG563_02040)	-	443685..444200 (-)	516	WP_007931653.1	DUF2062 domain-containing protein	-
AAG563_RS02045 (AAG563_02045)	comA	444349..446580 (+)	2232	WP_009042836.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
AAG563_RS02050 (AAG563_02050)	exbB	446683..447318 (+)	636	WP_007931657.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
AAG563_RS02055 (AAG563_02055)	-	447315..447743 (+)	429	WP_007931660.1	biopolymer transporter ExbD	-
AAG563_RS02060 (AAG563_02060)	lpxK	447743..448753 (+)	1011	WP_009042837.1	tetraacyldisaccharide 4'-kinase	-
AAG563_RS02065 (AAG563_02065)	-	448776..448961 (+)	186	WP_007931663.1	Trm112 family protein	-
AAG563_RS02070 (AAG563_02070)	kdsB	448958..449722 (+)	765	WP_009042838.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
AAG563_RS02075 (AAG563_02075)	-	449722..450186 (+)	465	WP_007931667.1	low molecular weight protein-tyrosine-phosphatase	-
AAG563_RS02080 (AAG563_02080)	murB	450183..451202 (+)	1020	WP_009042839.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81020.07 Da
• Isoelectric Point: 10.0609

>NTDB_id=988459 AAG563_RS02045 WP_009042836.1 444349..446580(+) (comA) [Pseudomonas chlororaphis strain NCIMB_15121]
MRTGMLALAAGLLSLRFLPALPAIGWLAVLPVVALMLLPFRTYPLALFLLGLAWACISAQSALDDRLAAPLDGQTRWLEG
RVVGLPQQAEGLVRFELEDGRARRGRIPQRLRLAWYGGPPVHSGERWRLAVKLKRPAGLVNLQAFDHEAWLLAQRIGATG
TVKDGQLLAATRESWRARIRQRLLQVDAHGRAGGLAALVLGDGSGLSQEDWRVLQDTGTVHLMVISGQHISLLAAVMYAL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNAVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLLLAVPYLGEGLLWLAGGLLDLLFRGLTLLAAQWPAWIAPAIPLWAWSISALGALLLLLPAGVPLRPLGWPMLLLVV
FPPKNTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRFGDSDLGARVVLPSLRKLGIARLDLMLLSHADADHAGGA
DAIQRGLPVARLVSGDPEGLPAYLPAEPCASGEQWQWDGVRFSLWQWTGAQNGNQKSCVMQVEAQGERLLLTGDIDALAE
RALLDTALAVETHWLQAPHHGSRSSSSAALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQGTAIYDSAEQGALRLML
GTYTEPTSLRAQRRFWRKWPLSP

Nucleotide

• Length: 2232 bp

>NTDB_id=988459 AAG563_RS02045 WP_009042836.1 444349..446580(+) (comA) [Pseudomonas chlororaphis strain NCIMB_15121]
ATGCGCACAGGGATGCTGGCGTTGGCGGCGGGGCTTTTGAGCCTGCGCTTTTTGCCGGCGCTGCCAGCGATCGGATGGCT
GGCAGTGCTGCCGGTAGTGGCCTTGATGCTGCTACCGTTTCGCACCTATCCATTGGCCCTTTTTCTGTTGGGCCTGGCGT
GGGCCTGCATCAGCGCGCAATCGGCGCTGGATGATCGTTTGGCGGCACCACTCGACGGGCAGACTCGCTGGCTCGAAGGT
CGAGTGGTGGGGCTGCCGCAGCAGGCCGAGGGGCTGGTGCGTTTCGAGCTGGAAGACGGGCGGGCGCGGCGCGGACGGAT
CCCGCAACGCCTGCGCCTGGCCTGGTATGGCGGGCCGCCGGTGCACAGCGGCGAACGCTGGCGCCTGGCGGTGAAGCTCA
AGCGACCTGCCGGCCTGGTCAATCTGCAGGCCTTCGATCACGAGGCCTGGTTGCTGGCCCAGCGCATCGGCGCCACGGGT
ACGGTCAAGGATGGGCAATTGCTGGCCGCCACCCGGGAGAGTTGGCGTGCGCGCATTCGCCAGCGCTTGCTGCAAGTCGA
TGCCCACGGGCGCGCCGGCGGCCTGGCGGCCCTGGTGCTGGGCGACGGTTCGGGCTTGAGCCAGGAAGACTGGCGTGTCT
TGCAAGACACCGGGACCGTGCACCTGATGGTGATTTCCGGGCAGCACATCAGCTTGCTGGCCGCAGTGATGTACGCCCTG
GTGGCGGGGCTGGCCCGCTACGGCCTGTGGCCCGGACGCTGGCCCTGGCTGCCCTGGGCCTGCGGGCTGGCATTCGCCTC
GGCCCTCGGGTACGGGTTGCTGGCGGGGTTCGATGTGCCGGTGCGCCGTGCCTGTGTGATGGTGGCCCTGGTGCTGATCT
GGCGCCTGCGCTTTCGCCACCTGGGCGCCTGGTGGCCGTTCCTGCTGGCATTGAATGCGGTGTTGTTGTTCGAGCCGCTG
GCCAGTCTGCAGCCGGGGTTCTGGCTGTCCTTTACCGCGGTGGCGGTATTGATCCTGATCTTCGGCGGGCGCCTGGGAGG
CTGGCGCTGGTGGCAGTCCTGGACCCGTATTCAATGGTTGATCGCCATCGGCCTGTGCCCGGTGCTGCTGGCGCTGGGGT
TGCCCATCAGTCTCAGCGGGCCGCTGGCCAATCTGCTGGCGGAACCCTGGATCAGCCTGCTGGTGCTGCCGCCGGCGTTG
CTCGGCACCTTGTTGCTGGCGGTGCCTTACCTGGGCGAAGGCTTGCTCTGGCTGGCCGGTGGTTTGCTGGACCTGCTGTT
CCGCGGCCTGACCCTGCTGGCTGCCCAGTGGCCGGCGTGGATAGCGCCGGCCATACCGCTCTGGGCCTGGAGCATCAGCG
CGCTGGGAGCCTTGCTGCTGTTGCTGCCCGCGGGCGTGCCGCTGCGTCCCTTGGGCTGGCCGATGCTGCTGTTGGTGGTG
TTCCCGCCGAAAAACACGCTGCCATATGGCGAGGCGGAAGTCTGGCAGCTGGATGTCGGGCAGGGCCTGGCGGTGCTGGT
ACGGACTCGCGAGCACGCGATGCTGTATGACGCCGGTCCGCGTTTTGGCGATTCCGACCTGGGCGCGCGGGTGGTGCTGC
CGTCCTTGCGCAAGCTGGGCATCGCGCGCCTCGACCTGATGCTGCTCAGCCACGCCGATGCCGATCATGCCGGTGGCGCC
GACGCCATTCAGCGAGGCTTGCCGGTGGCCAGGCTGGTCAGCGGCGATCCCGAGGGTTTGCCGGCCTATTTACCGGCAGA
GCCTTGCGCCAGCGGCGAGCAGTGGCAATGGGACGGGGTGCGTTTTTCCCTGTGGCAATGGACAGGTGCGCAGAACGGTA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCCAAGGCGAGCGTTTGCTGCTGACGGGGGATATCGATGCCTTGGCCGAA
CGCGCCTTGCTGGACACCGCGCTGGCCGTCGAGACCCACTGGTTGCAGGCGCCGCACCATGGCAGCCGCAGCTCGTCGTC
CGCGGCCCTGCTCAAGGCCCTTGCACCTTCGGCGGTGCTGATCTCCCGTGGGCACGGCAACGGGTTTGGGCATCCGCACC
CGCAGGTCGTCGAACGTTATCGCCAGCAAGGGACCGCCATTTACGACAGTGCGGAGCAGGGAGCGCTGCGGCTGATGCTG
GGCACTTACACCGAACCGACGAGCCTGCGGGCGCAGCGGCGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-463)

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-685)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	64.673	96.77	0.626