Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   AAG563_RS02050 Genome accession   NZ_CP152341
Coordinates   446683..447318 (+) Length   211 a.a.
NCBI ID   WP_007931657.1    Uniprot ID   A0AAX2DUM3
Organism   Pseudomonas chlororaphis strain NCIMB_15121     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 441683..452318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAG563_RS02030 (AAG563_02030) - 441928..442860 (+) 933 WP_007931649.1 ABC transporter ATP-binding protein -
  AAG563_RS02035 (AAG563_02035) - 442857..443636 (+) 780 WP_007931651.1 ABC transporter permease -
  AAG563_RS02040 (AAG563_02040) - 443685..444200 (-) 516 WP_007931653.1 DUF2062 domain-containing protein -
  AAG563_RS02045 (AAG563_02045) comA 444349..446580 (+) 2232 WP_009042836.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AAG563_RS02050 (AAG563_02050) exbB 446683..447318 (+) 636 WP_007931657.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AAG563_RS02055 (AAG563_02055) - 447315..447743 (+) 429 WP_007931660.1 biopolymer transporter ExbD -
  AAG563_RS02060 (AAG563_02060) lpxK 447743..448753 (+) 1011 WP_009042837.1 tetraacyldisaccharide 4'-kinase -
  AAG563_RS02065 (AAG563_02065) - 448776..448961 (+) 186 WP_007931663.1 Trm112 family protein -
  AAG563_RS02070 (AAG563_02070) kdsB 448958..449722 (+) 765 WP_009042838.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AAG563_RS02075 (AAG563_02075) - 449722..450186 (+) 465 WP_007931667.1 low molecular weight protein-tyrosine-phosphatase -
  AAG563_RS02080 (AAG563_02080) murB 450183..451202 (+) 1020 WP_009042839.1 UDP-N-acetylmuramate dehydrogenase -
  AAG563_RS02085 (AAG563_02085) - 451450..451920 (+) 471 WP_009042840.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22947.12 Da        Isoelectric Point: 8.1069

>NTDB_id=988460 AAG563_RS02050 WP_007931657.1 446683..447318(+) (exbB) [Pseudomonas chlororaphis strain NCIMB_15121]
MWELVKSGGWMMLPIILSSIVAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRAHSPLGEILAAGLAN
SKHGREVMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTSNAAVLAGGISKALITTA
SGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=988460 AAG563_RS02050 WP_007931657.1 446683..447318(+) (exbB) [Pseudomonas chlororaphis strain NCIMB_15121]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGTCGCGGTCGGCATCATTGC
CGAGCGTCTGTGGACCCTGCGGGCCAGCCGCGTCACCCCGCCTCATCTGCTGGGCCAGGTGTGGCGCTGGATCAAGGACA
AACAGCTGAACAAGGACAAGCTCAAGGAACTGCGCGCCCATTCGCCCCTGGGCGAGATCCTGGCCGCCGGCCTGGCCAAC
TCCAAGCATGGCCGCGAGGTCATGAAAGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATCCACGAACTGGAGCGCTACCT
CAATGCCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGGATGACCAGCAACGCCGCGGTGCTGGCCGGCGGTATCTCCAAGGCGCTGATCACCACCGCG
TCCGGCCTGATGGTCGGTATTCCGGCAGTGTTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAGCTGGTGGTTGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAAGTGGTGCAGGGCGACCGCGACGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.73

100

0.867

Multiple sequence alignment