Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   AAD080_RS14045 Genome accession   NZ_CP152307
Coordinates   3088286..3088918 (+) Length   210 a.a.
NCBI ID   WP_068715351.1    Uniprot ID   -
Organism   Vibrio tritonius strain JCM 16457 isolate MA35     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3083286..3093918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAD080_RS14020 - 3083373..3085295 (+) 1923 WP_342607675.1 ABC transporter ATP-binding protein -
  AAD080_RS14025 - 3085295..3085780 (+) 486 WP_342607676.1 TIGR02444 family protein -
  AAD080_RS14030 - 3085826..3086803 (+) 978 WP_342607677.1 hydrolase -
  AAD080_RS14035 - 3086873..3087082 (+) 210 WP_068715348.1 YheU family protein -
  AAD080_RS14040 - 3087175..3088044 (+) 870 WP_068715350.1 phosphoribulokinase -
  AAD080_RS14045 crp 3088286..3088918 (+) 633 WP_068715351.1 cAMP-activated global transcriptional regulator CRP Regulator
  AAD080_RS14050 - 3089020..3089808 (-) 789 WP_342607678.1 DUF1338 domain-containing protein -
  AAD080_RS14055 astD 3089871..3091328 (-) 1458 WP_342607679.1 succinylglutamate-semialdehyde dehydrogenase -
  AAD080_RS14060 astA 3091347..3092366 (-) 1020 WP_342607680.1 arginine N-succinyltransferase -
  AAD080_RS14065 - 3092466..3093677 (-) 1212 WP_342607681.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23579.39 Da        Isoelectric Point: 8.2772

>NTDB_id=988234 AAD080_RS14045 WP_068715351.1 3088286..3088918(+) (crp) [Vibrio tritonius strain JCM 16457 isolate MA35]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=988234 AAD080_RS14045 WP_068715351.1 3088286..3088918(+) (crp) [Vibrio tritonius strain JCM 16457 isolate MA35]
ATGGTTCTAGGTAAACCTCAAACAGACCCAACATTAGAGTGGTTTCTTTCACACTGTCATATTCACAAATACCCATCAAA
AAGCACTTTGATTCATGCGGGTGAGAAGGCAGAAACGCTGTATTACATCGTAAAAGGTTCTGTTGCGGTATTGATTAAAG
ATGAAGAAGGCAAGGAGATGATCCTTTCCTATCTAAATCAGGGTGATTTTATCGGTGAACTTGGTCTTTTCGAAGAAGGT
CAAGAACGTAGCGCCTGGGTTCGAGCAAAATCTCCATGTGAAGTAGCTGAGATTTCATTTAAGAAATTCCGTCAGCTAAT
TCAAGTTAACCCAGACATTCTAATGCGTCTTTCTGGTCAAATGGCACGTCGCCTACAAGTGACTAGCCAAAAAGTGGGCG
ATTTAGCCTTCCTTGACGTAACTGGTCGTATTGCTCAGACTCTTTTGAATCTAGCAAAACAACCTGATGCAATGACTCAC
CCAGACGGTATGCAAATTAAAATTACCCGTCAGGAGATTGGTCAAATCGTTGGTTGTTCACGCGAAACGGTTGGTCGTAT
TCTTAAGATGCTTGAAGAACAAAACCTTATTTCTGCACACGGCAAAACTATCGTCGTGTACGGCACCCGTTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.571

100

0.986
  crp Haemophilus influenzae Rd KW20

75.98

97.143

0.738
  crp Acinetobacter baumannii D1279779

46.86

98.571

0.462

Multiple sequence alignment