Detailed information NTG0987208

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: KNP07_RS24320
• Genome accession: NZ_CP152075
• Coordinates: 5224225..5225097 (+)
• Length: 290 a.a.
• NCBI ID: WP_134279316.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain NCTR 501
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5219225..5230097

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KNP07_RS24305 (KNP07_24310)	-	5220608..5221072 (-)	465	WP_124089607.1	pilin	-
KNP07_RS24310 (KNP07_24315)	pilB	5221303..5223003 (+)	1701	WP_128672463.1	type IV-A pilus assembly ATPase PilB	Machinery gene
KNP07_RS24315 (KNP07_24320)	pilC	5223007..5224224 (+)	1218	WP_003107299.1	type II secretion system F family protein	Machinery gene
KNP07_RS24320 (KNP07_24325)	pilD	5224225..5225097 (+)	873	WP_134279316.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
KNP07_RS24325 (KNP07_24330)	coaE	5225094..5225705 (+)	612	WP_003094654.1	dephospho-CoA kinase	-
KNP07_RS24330 (KNP07_24335)	yacG	5225702..5225902 (+)	201	WP_017148551.1	DNA gyrase inhibitor YacG	-
KNP07_RS24335 (KNP07_24340)	-	5225939..5226148 (-)	210	WP_003094660.1	hypothetical protein	-
KNP07_RS24340 (KNP07_24345)	-	5226254..5226943 (-)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
KNP07_RS24345 (KNP07_24350)	-	5226940..5227410 (-)	471	WP_003094664.1	hypothetical protein	-
KNP07_RS24350 (KNP07_24355)	-	5227407..5227832 (-)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
KNP07_RS24355 (KNP07_24360)	-	5227966..5228595 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
KNP07_RS24360 (KNP07_24365)	-	5228592..5229041 (+)	450	WP_003094670.1	MOSC domain-containing protein	-
KNP07_RS24365 (KNP07_24370)	-	5229067..5229237 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31873.90 Da
• Isoelectric Point: 7.7068

>NTDB_id=987208 KNP07_RS24320 WP_134279316.1 5224225..5225097(+) (pilD) [Pseudomonas aeruginosa strain NCTR 501]
MTLLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESSTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=987208 KNP07_RS24320 WP_134279316.1 5224225..5225097(+) (pilD) [Pseudomonas aeruginosa strain NCTR 501]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATACCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTATGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGTCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACTATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCAGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.714	96.552	0.538
pilD	Vibrio campbellii strain DS40M4	53.004	97.586	0.517
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	48.921	95.862	0.469