Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | AAGT87_RS14590 | Genome accession | NZ_CP152071 |
| Coordinates | 2157356..2157946 (+) | Length | 196 a.a. |
| NCBI ID | WP_353495224.1 | Uniprot ID | - |
| Organism | Vibrio cholerae strain Sudan_2019_18 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2152356..2162946
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAGT87_RS14575 (AAGT87_14580) | - | 2153153..2155630 (-) | 2478 | WP_353495223.1 | penicillin-binding protein 1A | - |
| AAGT87_RS14580 (AAGT87_14585) | pilM | 2155773..2156789 (+) | 1017 | WP_000520444.1 | type IV pilus assembly protein PilM | Machinery gene |
| AAGT87_RS14585 (AAGT87_14590) | pilN | 2156779..2157363 (+) | 585 | WP_000902745.1 | PilN domain-containing protein | Machinery gene |
| AAGT87_RS14590 (AAGT87_14595) | pilO | 2157356..2157946 (+) | 591 | WP_353495224.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| AAGT87_RS14595 (AAGT87_14600) | pilP | 2157936..2158454 (+) | 519 | WP_000792032.1 | pilus assembly protein PilP | Machinery gene |
| AAGT87_RS14600 (AAGT87_14605) | pilQ | 2158480..2160195 (+) | 1716 | WP_000788426.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| AAGT87_RS14605 (AAGT87_14610) | aroK | 2160382..2160906 (+) | 525 | WP_000818616.1 | shikimate kinase AroK | - |
| AAGT87_RS14610 (AAGT87_14615) | aroB | 2160934..2162019 (+) | 1086 | WP_000439805.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 22893.31 Da Isoelectric Point: 4.4169
>NTDB_id=987134 AAGT87_RS14590 WP_353495224.1 2157356..2157946(+) (pilO) [Vibrio cholerae strain Sudan_2019_18]
MASLQELELDEISEWPLLPQLVVILLIMLLIQGAGYWFYLMPKQDEIALLKQEEETVKATLRIKANKVAVLPQIQAQLDE
LKERYDFLLRQLLVQKELASMLASVNQLGLDSSLTFTRIDWGERESQEFLYRLPLNIELTGSYHDIGDFSQAIAKLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKQEVDDEK
MASLQELELDEISEWPLLPQLVVILLIMLLIQGAGYWFYLMPKQDEIALLKQEEETVKATLRIKANKVAVLPQIQAQLDE
LKERYDFLLRQLLVQKELASMLASVNQLGLDSSLTFTRIDWGERESQEFLYRLPLNIELTGSYHDIGDFSQAIAKLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKQEVDDEK
Nucleotide
Download Length: 591 bp
>NTDB_id=987134 AAGT87_RS14590 WP_353495224.1 2157356..2157946(+) (pilO) [Vibrio cholerae strain Sudan_2019_18]
ATGGCTAGTCTACAAGAGCTAGAACTGGATGAAATTAGTGAATGGCCGCTGCTGCCTCAGTTGGTGGTGATTCTGCTTAT
CATGCTACTGATCCAAGGTGCTGGTTATTGGTTCTATCTCATGCCCAAACAAGACGAGATTGCGCTGTTAAAGCAGGAAG
AGGAAACCGTCAAGGCGACACTGCGCATCAAAGCCAATAAAGTGGCGGTATTGCCGCAGATCCAAGCTCAGTTGGACGAG
CTCAAAGAGCGTTACGATTTTTTACTGCGCCAGCTACTGGTGCAAAAAGAGTTAGCCAGCATGCTGGCGTCAGTCAACCA
GCTTGGGCTCGATAGTTCGCTTACCTTTACGCGGATTGATTGGGGGGAGCGTGAAAGCCAAGAGTTTCTTTACCGCTTAC
CGCTCAATATCGAACTGACGGGGAGCTATCACGATATTGGCGATTTTTCGCAAGCGATTGCCAAGTTACCGCGCATCATC
AACTTCGACGATGTGGACTGGCAGCGTGTCAGCCAAGAGAGTAGCACGCTGCACTTTCGAGTCAGAGCCTACACCTACCA
ATTTAAGCAGGAGGTGGATGATGAAAAATAA
ATGGCTAGTCTACAAGAGCTAGAACTGGATGAAATTAGTGAATGGCCGCTGCTGCCTCAGTTGGTGGTGATTCTGCTTAT
CATGCTACTGATCCAAGGTGCTGGTTATTGGTTCTATCTCATGCCCAAACAAGACGAGATTGCGCTGTTAAAGCAGGAAG
AGGAAACCGTCAAGGCGACACTGCGCATCAAAGCCAATAAAGTGGCGGTATTGCCGCAGATCCAAGCTCAGTTGGACGAG
CTCAAAGAGCGTTACGATTTTTTACTGCGCCAGCTACTGGTGCAAAAAGAGTTAGCCAGCATGCTGGCGTCAGTCAACCA
GCTTGGGCTCGATAGTTCGCTTACCTTTACGCGGATTGATTGGGGGGAGCGTGAAAGCCAAGAGTTTCTTTACCGCTTAC
CGCTCAATATCGAACTGACGGGGAGCTATCACGATATTGGCGATTTTTCGCAAGCGATTGCCAAGTTACCGCGCATCATC
AACTTCGACGATGTGGACTGGCAGCGTGTCAGCCAAGAGAGTAGCACGCTGCACTTTCGAGTCAGAGCCTACACCTACCA
ATTTAAGCAGGAGGTGGATGATGAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio cholerae strain A1552 |
99.49 |
100 |
0.995 |
| pilO | Vibrio campbellii strain DS40M4 |
71.429 |
96.429 |
0.689 |