Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   MHH29_RS05255 Genome accession   NZ_CP152048
Coordinates   994588..995277 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus sp. FSL K6-0046     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 989588..1000277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH29_RS05220 (MHH29_05220) - 989674..990156 (-) 483 WP_007499977.1 flagellar protein FlgN -
  MHH29_RS05225 (MHH29_05225) flgM 990175..990438 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  MHH29_RS05230 (MHH29_05230) - 990518..990937 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  MHH29_RS05235 (MHH29_05235) comFC 990994..991680 (-) 687 WP_172793290.1 ComF family protein Machinery gene
  MHH29_RS05240 (MHH29_05240) - 991677..991970 (-) 294 WP_008348267.1 competence protein ComFB -
  MHH29_RS05245 (MHH29_05245) comFA 992035..993162 (-) 1128 WP_082136017.1 DEAD/DEAH box helicase Machinery gene
  MHH29_RS05250 (MHH29_05250) - 993534..994376 (-) 843 WP_024719242.1 DegV family protein -
  MHH29_RS05255 (MHH29_05255) degU 994588..995277 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  MHH29_RS05260 (MHH29_05260) degS 995342..996517 (-) 1176 WP_024719243.1 sensor histidine kinase Regulator
  MHH29_RS05265 (MHH29_05265) - 996739..997407 (+) 669 WP_017357860.1 YigZ family protein -
  MHH29_RS05270 (MHH29_05270) - 997392..998489 (+) 1098 WP_024719244.1 LCP family protein -
  MHH29_RS05275 (MHH29_05275) - 998528..999595 (-) 1068 WP_024719245.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=986786 MHH29_RS05255 WP_008348273.1 994588..995277(-) (degU) [Bacillus sp. FSL K6-0046]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=986786 MHH29_RS05255 WP_008348273.1 994588..995277(-) (degU) [Bacillus sp. FSL K6-0046]
GTGACTAAAGTAAATATTGTAATTATCGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTGGAGGCTACAAAACAGCTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATCCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTAAAAACAGGAGCAAGAGGCTACTTGTTAAAAGA
AATGGATGCAGATACCCTCATTGAAGCAGTAAAAGTAGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCTTAGCAACAAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGTATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATCTTGCAAAAAATGAATGTAAATGACCGTA
CTCAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment