Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   MHI46_RS16790 Genome accession   NZ_CP152042
Coordinates   3217981..3218670 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus sp. FSL K6-1000     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3212981..3223670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHI46_RS16755 (MHI46_16755) - 3213058..3213540 (-) 483 WP_024423619.1 flagellar protein FlgN -
  MHI46_RS16760 (MHI46_16760) flgM 3213559..3213822 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  MHI46_RS16765 (MHI46_16765) - 3213902..3214321 (-) 420 WP_039181808.1 TIGR03826 family flagellar region protein -
  MHI46_RS16770 (MHI46_16770) comFC 3214378..3215034 (-) 657 WP_251181034.1 ComF family protein Machinery gene
  MHI46_RS16775 (MHI46_16775) - 3215061..3215354 (-) 294 WP_058837538.1 competence protein ComFB -
  MHI46_RS16780 (MHI46_16780) comFA 3215404..3216549 (-) 1146 WP_342502963.1 DEAD/DEAH box helicase Machinery gene
  MHI46_RS16785 (MHI46_16785) - 3216922..3217764 (-) 843 WP_039181815.1 DegV family protein -
  MHI46_RS16790 (MHI46_16790) degU 3217981..3218670 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  MHI46_RS16795 (MHI46_16795) degS 3218735..3219910 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  MHI46_RS16800 (MHI46_16800) - 3220132..3220800 (+) 669 WP_251181032.1 YigZ family protein -
  MHI46_RS16805 (MHI46_16805) - 3220785..3221876 (+) 1092 WP_058837535.1 LCP family protein -
  MHI46_RS16810 (MHI46_16810) - 3221912..3222979 (-) 1068 WP_034660156.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=986510 MHI46_RS16790 WP_008348273.1 3217981..3218670(-) (degU) [Bacillus sp. FSL K6-1000]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=986510 MHI46_RS16790 WP_008348273.1 3217981..3218670(-) (degU) [Bacillus sp. FSL K6-1000]
GTGACTAAAGTAAATATTGTAATTATTGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTTGAAGCTACAAAGCAGCTTGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGATGATGAAAACTATGTAACACATGCATTGAAAACAGGAGCGAGAGGCTACCTGTTAAAAGA
AATGGATGCAGACACACTCATCGAAGCAGTGAAAGTTGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ATTTAGTAAATGAATTCCGACGCCTAGCAACTAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACTAGACGTGAATGCGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGAATTGG
TGAATCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGCAACATTTTGCAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment