Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   NST80_RS08450 Genome accession   NZ_CP152039
Coordinates   1824120..1825157 (-) Length   345 a.a.
NCBI ID   WP_037599161.1    Uniprot ID   -
Organism   Streptococcus sp. FSL K6-1323     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1819120..1830157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NST80_RS08425 (NST80_08425) ilvD 1819392..1821095 (-) 1704 WP_002884316.1 dihydroxy-acid dehydratase -
  NST80_RS08430 (NST80_08430) - 1821223..1822404 (+) 1182 WP_045769072.1 NAD(P)/FAD-dependent oxidoreductase -
  NST80_RS08440 (NST80_08440) trmB 1822620..1823261 (-) 642 WP_003096317.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  NST80_RS08445 (NST80_08445) - 1823271..1824062 (-) 792 WP_118172077.1 phosphotransferase family protein -
  NST80_RS08450 (NST80_08450) pptB 1824120..1825157 (-) 1038 WP_037599161.1 ABC transporter permease Regulator
  NST80_RS08455 (NST80_08455) pptA 1825154..1825885 (-) 732 WP_037599160.1 ABC transporter ATP-binding protein Regulator
  NST80_RS08460 (NST80_08460) - 1825950..1826369 (+) 420 WP_037599159.1 HIT family protein -
  NST80_RS08465 (NST80_08465) - 1826366..1826665 (+) 300 WP_014634939.1 hypothetical protein -
  NST80_RS08470 (NST80_08470) - 1826846..1827013 (-) 168 WP_014634940.1 hypothetical protein -
  NST80_RS08475 (NST80_08475) - 1827588..1828196 (-) 609 WP_002884297.1 DUF4230 domain-containing protein -
  NST80_RS08480 (NST80_08480) - 1828214..1828339 (-) 126 WP_002884447.1 hypothetical protein -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 40128.65 Da        Isoelectric Point: 10.5986

>NTDB_id=986337 NST80_RS08450 WP_037599161.1 1824120..1825157(-) (pptB) [Streptococcus sp. FSL K6-1323]
MIAKLFKERSKRFNTRCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLKHFPKNPWAIILGLLVLCLLLPFWGNIATYLE
PADKHYLLVKEEEVLDHVKKATGRAFRFWVIVQTLIFILVIPLFLALGLPVWGVILVAVAMAILKYFIFQKKAQPFYRQS
GLNWTEAIAAENKRQQSILKFFSLFTNVKGITSSVKRRSYLDAILKRTKKDKEHTWYNLYLRAFLRSGDYFALSLRLFAL
TLLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPVGKDMQVSNLKRLISQIVLVLTLVQAICLFDLKF
SLILVGMMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=986337 NST80_RS08450 WP_037599161.1 1824120..1825157(-) (pptB) [Streptococcus sp. FSL K6-1323]
ATGATAGCTAAGCTATTTAAGGAGCGTAGCAAGCGATTCAATACCCGCTGTGCTAAGTATAGTCGCTACGTTTTTAATGA
TCATTTTATCTTGGTTCTTCTCTTTCTGCTAGGCTTTGTCTTAGTTCAGTATAGCCAGTTGCTGAAGCATTTTCCAAAAA
ATCCGTGGGCAATCATTCTTGGCTTGCTTGTGCTGTGTCTGTTATTACCTTTCTGGGGGAATATTGCTACTTATCTAGAA
CCTGCGGACAAGCACTACCTTTTGGTTAAGGAAGAAGAGGTGCTAGACCATGTTAAGAAGGCAACAGGGCGTGCTTTTAG
ATTTTGGGTAATAGTACAAACCCTGATTTTTATTTTGGTTATTCCTCTCTTTTTAGCCTTGGGACTTCCAGTTTGGGGAG
TTATCCTTGTAGCTGTGGCTATGGCTATTCTTAAGTATTTTATTTTCCAGAAAAAGGCCCAACCTTTTTATAGACAGTCT
GGCCTGAATTGGACTGAGGCTATTGCAGCGGAAAACAAGCGTCAACAATCGATTCTGAAGTTCTTTTCACTCTTTACCAA
TGTTAAGGGGATTACGTCGAGTGTTAAACGCCGTTCTTATTTGGATGCTATTCTCAAACGTACAAAGAAAGACAAGGAAC
ATACCTGGTACAATCTTTACCTAAGGGCCTTCTTGCGTTCTGGAGATTACTTTGCCCTTAGCCTACGACTTTTTGCTTTA
ACGCTTCTAGTTATCTTTTTGGTTCCTGAAAAATGGTTGGCTATGGTGCTTGTGGTTGTTTTTGACTACCTCTTGCTCTT
CCAGCTCACAGCACTTAAATCGCACTTTGCTTATCAGAGAATGGCTAACCTTATGCCAGTTGGAAAAGACATGCAGGTAA
GCAATCTTAAGCGCTTGATTAGCCAGATTGTACTTGTACTGACTTTGGTACAGGCTATTTGTCTCTTCGACCTTAAGTTT
AGTCTGATTTTGGTTGGAATGATGCTAGTTCTGAGCCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

97.093

99.71

0.968

  pptB Streptococcus thermophilus LMD-9

92.733

99.71

0.925


Multiple sequence alignment