Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MHH37_RS20890 Genome accession   NZ_CP152038
Coordinates   4121086..4121643 (-) Length   185 a.a.
NCBI ID   WP_014822353.1    Uniprot ID   -
Organism   Solibacillus sp. FSL K6-1781     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4116086..4126643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MHH37_RS20865 (MHH37_20865) rbsD 4116865..4117254 (+) 390 WP_342574497.1 D-ribose pyranase -
  MHH37_RS20870 (MHH37_20870) - 4117270..4118766 (+) 1497 WP_342574498.1 sugar ABC transporter ATP-binding protein -
  MHH37_RS20875 (MHH37_20875) rbsC 4118753..4119694 (+) 942 WP_014822355.1 ribose ABC transporter permease -
  MHH37_RS20880 (MHH37_20880) rbsB 4119710..4120648 (+) 939 WP_342574501.1 ribose ABC transporter substrate-binding protein RbsB -
  MHH37_RS20885 (MHH37_20885) rpsR 4120805..4121044 (-) 240 WP_172954456.1 30S ribosomal protein S18 -
  MHH37_RS20890 (MHH37_20890) ssbA 4121086..4121643 (-) 558 WP_014822353.1 single-stranded DNA-binding protein Machinery gene
  MHH37_RS20895 (MHH37_20895) rpsF 4121682..4121972 (-) 291 WP_008408357.1 30S ribosomal protein S6 -
  MHH37_RS20900 (MHH37_20900) ychF 4122182..4123282 (-) 1101 WP_014822352.1 redox-regulated ATPase YchF -
  MHH37_RS20905 (MHH37_20905) - 4123411..4123611 (-) 201 WP_008408362.1 DUF951 domain-containing protein -
  MHH37_RS20910 (MHH37_20910) - 4123615..4124520 (-) 906 WP_087617924.1 mechanosensitive ion channel family protein -
  MHH37_RS20915 (MHH37_20915) yyaC 4124636..4125262 (+) 627 WP_008408365.1 spore protease YyaC -
  MHH37_RS20920 (MHH37_20920) - 4125179..4125886 (-) 708 WP_342574505.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20272.17 Da        Isoelectric Point: 4.7719

>NTDB_id=986286 MHH37_RS20890 WP_014822353.1 4121086..4121643(-) (ssbA) [Solibacillus sp. FSL K6-1781]
MINRVVLVGRLTKDPELRYTPSGVPMARFTIAVNRTFSSQSGEREADFIGCIAWRKQAENLANFMRKGSLIGVEGRIQTG
SFEGQDGKRVYTTDVVADSVQFLEPRGGANASQGAPSQQYSGGQNYGGQPSYNQPNQQFGGAQSQDSYGSYQQPAQNQQN
YTRVDEDPFANSKGPIEVSEDDLPF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=986286 MHH37_RS20890 WP_014822353.1 4121086..4121643(-) (ssbA) [Solibacillus sp. FSL K6-1781]
ATGATTAACCGTGTCGTATTAGTCGGAAGGCTTACAAAGGATCCAGAGCTTCGTTACACACCGAGTGGAGTTCCAATGGC
ACGTTTTACGATTGCCGTAAACCGTACATTTTCGAGTCAGTCGGGTGAACGCGAAGCAGATTTCATAGGCTGTATCGCCT
GGAGAAAACAAGCTGAAAACTTAGCAAACTTCATGAGAAAAGGGAGTTTGATTGGTGTAGAGGGTCGTATTCAAACAGGT
AGCTTTGAAGGACAAGATGGAAAGCGTGTGTATACAACAGATGTCGTTGCTGATTCAGTGCAGTTCTTAGAACCACGTGG
AGGAGCTAATGCATCACAAGGTGCACCAAGCCAACAATACAGTGGAGGGCAAAATTATGGTGGTCAGCCATCTTATAATC
AGCCTAACCAACAATTTGGAGGCGCGCAATCACAGGATTCTTACGGTTCTTATCAACAGCCAGCTCAAAATCAGCAAAAC
TATACACGTGTAGATGAAGATCCATTTGCAAACAGTAAAGGACCGATTGAAGTTTCTGAAGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.676

100

0.557
  ssb Latilactobacillus sakei subsp. sakei 23K

49.462

100

0.497

Multiple sequence alignment