Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NYE62_RS18145 Genome accession   NZ_CP152037
Coordinates   3660838..3661527 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus sp. FSL K6-2861     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3655838..3666527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE62_RS18110 (NYE62_18110) - 3656035..3656517 (-) 483 WP_039253650.1 flagellar protein FlgN -
  NYE62_RS18115 (NYE62_18115) flgM 3656532..3656798 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  NYE62_RS18120 (NYE62_18120) - 3656868..3657287 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  NYE62_RS18125 (NYE62_18125) comFC 3657361..3658050 (-) 690 WP_197061611.1 phosphoribosyltransferase family protein Machinery gene
  NYE62_RS18130 (NYE62_18130) - 3658056..3658340 (-) 285 WP_039253645.1 competence protein ComFB -
  NYE62_RS18135 (NYE62_18135) comFA 3658398..3659783 (-) 1386 WP_047936252.1 DEAD/DEAH box helicase Machinery gene
  NYE62_RS18140 (NYE62_18140) - 3659892..3660740 (-) 849 WP_007407483.1 DegV family protein -
  NYE62_RS18145 (NYE62_18145) degU 3660838..3661527 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NYE62_RS18150 (NYE62_18150) degS 3661604..3662767 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  NYE62_RS18155 (NYE62_18155) - 3662990..3663637 (+) 648 WP_003151384.1 YigZ family protein -
  NYE62_RS18160 (NYE62_18160) - 3663642..3664856 (+) 1215 WP_015418337.1 LCP family protein -
  NYE62_RS18165 (NYE62_18165) - 3664946..3666022 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=986240 NYE62_RS18145 WP_003219701.1 3660838..3661527(-) (degU) [Bacillus sp. FSL K6-2861]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=986240 NYE62_RS18145 WP_003219701.1 3660838..3661527(-) (degU) [Bacillus sp. FSL K6-2861]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACTGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment