Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NYE62_RS18135 Genome accession   NZ_CP152037
Coordinates   3658398..3659783 (-) Length   461 a.a.
NCBI ID   WP_047936252.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-2861     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3653398..3664783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE62_RS18100 (NYE62_18100) flgL 3653573..3654490 (-) 918 WP_342497106.1 flagellar hook-associated protein FlgL -
  NYE62_RS18105 (NYE62_18105) flgK 3654502..3656019 (-) 1518 WP_342497107.1 flagellar hook-associated protein FlgK -
  NYE62_RS18110 (NYE62_18110) - 3656035..3656517 (-) 483 WP_039253650.1 flagellar protein FlgN -
  NYE62_RS18115 (NYE62_18115) flgM 3656532..3656798 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  NYE62_RS18120 (NYE62_18120) - 3656868..3657287 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  NYE62_RS18125 (NYE62_18125) comFC 3657361..3658050 (-) 690 WP_197061611.1 phosphoribosyltransferase family protein Machinery gene
  NYE62_RS18130 (NYE62_18130) - 3658056..3658340 (-) 285 WP_039253645.1 competence protein ComFB -
  NYE62_RS18135 (NYE62_18135) comFA 3658398..3659783 (-) 1386 WP_047936252.1 DEAD/DEAH box helicase Machinery gene
  NYE62_RS18140 (NYE62_18140) - 3659892..3660740 (-) 849 WP_007407483.1 DegV family protein -
  NYE62_RS18145 (NYE62_18145) degU 3660838..3661527 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NYE62_RS18150 (NYE62_18150) degS 3661604..3662767 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  NYE62_RS18155 (NYE62_18155) - 3662990..3663637 (+) 648 WP_003151384.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52517.88 Da        Isoelectric Point: 10.1839

>NTDB_id=986239 NYE62_RS18135 WP_047936252.1 3658398..3659783(-) (comFA) [Bacillus sp. FSL K6-2861]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFTEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVVMGRADELTSLYSWNQAHENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGGLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=986239 NYE62_RS18135 WP_047936252.1 3658398..3659783(-) (comFA) [Bacillus sp. FSL K6-2861]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGACCAGCGTATTAAGCGTTTTACAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAATCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCGTGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCATGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACCCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGAAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACCGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCGGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACCGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.391

99.783

0.623

Multiple sequence alignment