Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   NYE62_RS18125 Genome accession   NZ_CP152037
Coordinates   3657361..3658050 (-) Length   229 a.a.
NCBI ID   WP_197061611.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-2861     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3652361..3663050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE62_RS18090 (NYE62_18090) fliW 3652452..3652883 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  NYE62_RS18095 (NYE62_18095) - 3652913..3653482 (-) 570 WP_007407476.1 DUF6470 family protein -
  NYE62_RS18100 (NYE62_18100) flgL 3653573..3654490 (-) 918 WP_342497106.1 flagellar hook-associated protein FlgL -
  NYE62_RS18105 (NYE62_18105) flgK 3654502..3656019 (-) 1518 WP_342497107.1 flagellar hook-associated protein FlgK -
  NYE62_RS18110 (NYE62_18110) - 3656035..3656517 (-) 483 WP_039253650.1 flagellar protein FlgN -
  NYE62_RS18115 (NYE62_18115) flgM 3656532..3656798 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  NYE62_RS18120 (NYE62_18120) - 3656868..3657287 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  NYE62_RS18125 (NYE62_18125) comFC 3657361..3658050 (-) 690 WP_197061611.1 phosphoribosyltransferase family protein Machinery gene
  NYE62_RS18130 (NYE62_18130) - 3658056..3658340 (-) 285 WP_039253645.1 competence protein ComFB -
  NYE62_RS18135 (NYE62_18135) comFA 3658398..3659783 (-) 1386 WP_047936252.1 DEAD/DEAH box helicase Machinery gene
  NYE62_RS18140 (NYE62_18140) - 3659892..3660740 (-) 849 WP_007407483.1 DegV family protein -
  NYE62_RS18145 (NYE62_18145) degU 3660838..3661527 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NYE62_RS18150 (NYE62_18150) degS 3661604..3662767 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25229.83 Da        Isoelectric Point: 8.0779

>NTDB_id=986238 NYE62_RS18125 WP_197061611.1 3657361..3658050(-) (comFC) [Bacillus sp. FSL K6-2861]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=986238 NYE62_RS18125 WP_197061611.1 3657361..3658050(-) (comFC) [Bacillus sp. FSL K6-2861]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTATATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCTGTCATTTCCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGATAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594

Multiple sequence alignment