Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   NYE62_RS12940 Genome accession   NZ_CP152037
Coordinates   2645261..2646331 (-) Length   356 a.a.
NCBI ID   WP_342496986.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-2861     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2640261..2651331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE62_RS12890 (NYE62_12890) - 2640321..2640905 (-) 585 WP_144663990.1 signal peptidase I -
  NYE62_RS12895 (NYE62_12895) tapA 2640877..2641548 (-) 672 WP_095352946.1 amyloid fiber anchoring/assembly protein TapA -
  NYE62_RS12900 (NYE62_12900) - 2641807..2642136 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  NYE62_RS12905 (NYE62_12905) - 2642176..2642355 (-) 180 WP_003153093.1 YqzE family protein -
  NYE62_RS12910 (NYE62_12910) comGG 2642412..2642789 (-) 378 WP_015417814.1 competence type IV pilus minor pilin ComGG Machinery gene
  NYE62_RS12915 (NYE62_12915) comGF 2642790..2643290 (-) 501 WP_260854721.1 competence type IV pilus minor pilin ComGF -
  NYE62_RS12920 (NYE62_12920) comGE 2643199..2643513 (-) 315 WP_144663989.1 competence type IV pilus minor pilin ComGE Machinery gene
  NYE62_RS12925 (NYE62_12925) comGD 2643497..2643934 (-) 438 WP_012117983.1 competence type IV pilus minor pilin ComGD Machinery gene
  NYE62_RS12930 (NYE62_12930) comGC 2643924..2644232 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  NYE62_RS12935 (NYE62_12935) comGB 2644237..2645274 (-) 1038 WP_342496985.1 competence type IV pilus assembly protein ComGB Machinery gene
  NYE62_RS12940 (NYE62_12940) comGA 2645261..2646331 (-) 1071 WP_342496986.1 competence type IV pilus ATPase ComGA Machinery gene
  NYE62_RS12945 (NYE62_12945) - 2646524..2647474 (-) 951 WP_015417820.1 magnesium transporter CorA family protein -
  NYE62_RS12950 (NYE62_12950) - 2647620..2648921 (+) 1302 WP_012117986.1 hemolysin family protein -
  NYE62_RS12955 (NYE62_12955) - 2648959..2649789 (-) 831 WP_015417821.1 STAS domain-containing protein -
  NYE62_RS12965 (NYE62_12965) - 2649996..2650376 (-) 381 WP_064115382.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  NYE62_RS12970 (NYE62_12970) - 2650613..2650858 (+) 246 WP_003153078.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40559.94 Da        Isoelectric Point: 9.4729

>NTDB_id=986220 NYE62_RS12940 WP_342496986.1 2645261..2646331(-) (comGA) [Bacillus sp. FSL K6-2861]
MKNIETYSRNIINEAYMARASDIHIVPREKDAFIHFRIGHALVKKRVLKKEECVRLISHFKFLSAMDIGERRKPQNGSLS
LPLPTETVHLRMSTLPTMNDESLVIRLLPKRQIPPLDKLSLFRGAGAALLSFLKHSHGLLLFTGPTGSGKTTTLYSLVNY
AKRHFNRRIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLSSLH
TRDAKGAIYRLLEFGVNMTEIEQTVIAIAAQRLVDLTCPFCKEENCSVYCRMYRQTRRAGIYELLYGKNLTQCFQEAKGE
HANFQYQTLRRLIRKGIALGYVTTDNYDRWVYHEAD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=986220 NYE62_RS12940 WP_342496986.1 2645261..2646331(-) (comGA) [Bacillus sp. FSL K6-2861]
GTGAAAAATATAGAAACATACAGCAGGAACATCATAAACGAGGCCTATATGGCAAGGGCTTCAGATATACACATTGTGCC
GAGAGAAAAGGATGCTTTCATTCATTTTCGCATCGGCCATGCTCTTGTGAAAAAAAGAGTCTTAAAAAAAGAGGAATGCG
TAAGGCTTATTTCTCATTTTAAGTTTTTATCGGCCATGGATATAGGAGAAAGACGTAAGCCGCAAAACGGGTCATTGTCT
CTGCCGCTTCCCACGGAAACCGTTCATTTGAGAATGTCAACCTTGCCGACAATGAATGATGAAAGTCTTGTCATCAGGCT
TTTGCCTAAGCGGCAGATTCCCCCTCTGGATAAACTGTCCTTATTTCGGGGGGCGGGCGCCGCACTATTGTCCTTTCTGA
AGCATTCGCACGGCCTGCTTCTGTTTACCGGCCCCACCGGATCTGGAAAAACGACCACTCTTTACTCGCTTGTCAACTAT
GCAAAAAGGCATTTCAACCGGCGTATTGTCACGCTTGAAGACCCCGTAGAAACAAGAGATGAGGATGTGTTGCAAGTTCA
GGTGAATGAAAAAGCCGGAGTCACATATTCCGCCGGTTTAAAAGCGATTTTAAGACATGATCCCGATATGATCATTTTAG
GGGAAATCAGAGATGCCGAGACGGCTGAAATCGCAGTCCGCGCGGCCATGACGGGACACCTCGTTCTTTCAAGCCTGCAT
ACAAGAGATGCTAAGGGCGCCATATACAGGCTGCTGGAGTTCGGCGTGAACATGACAGAAATTGAACAAACCGTCATTGC
TATTGCCGCTCAGCGTCTGGTTGATTTAACATGTCCGTTCTGCAAAGAGGAAAACTGTTCCGTGTACTGCCGGATGTACA
GGCAGACACGCCGTGCGGGCATTTATGAACTGCTCTACGGGAAAAACCTCACCCAATGCTTTCAGGAAGCAAAGGGAGAG
CACGCCAATTTTCAATATCAGACGCTCCGCAGGCTGATCAGAAAAGGAATCGCGCTCGGCTATGTCACGACCGACAATTA
CGATCGGTGGGTGTATCATGAAGCGGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

82.022

100

0.82
  pilB Glaesserella parasuis strain SC1401

38.793

97.753

0.379
  pilF Thermus thermophilus HB27

37.892

98.596

0.374

Multiple sequence alignment