Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   NYE62_RS12880 Genome accession   NZ_CP152037
Coordinates   2639088..2639423 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-2861     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2634088..2644423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE62_RS12860 (NYE62_12860) gcvT 2634694..2635794 (-) 1101 WP_015240202.1 glycine cleavage system aminomethyltransferase GcvT -
  NYE62_RS12865 (NYE62_12865) - 2636218..2637888 (+) 1671 WP_063094778.1 SNF2-related protein -
  NYE62_RS12870 (NYE62_12870) - 2637910..2638704 (+) 795 WP_007408330.1 YqhG family protein -
  NYE62_RS12875 (NYE62_12875) sinI 2638881..2639054 (+) 174 WP_003153105.1 anti-repressor SinI family protein Regulator
  NYE62_RS12880 (NYE62_12880) sinR 2639088..2639423 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  NYE62_RS12885 (NYE62_12885) - 2639471..2640256 (-) 786 WP_007408329.1 TasA family protein -
  NYE62_RS12890 (NYE62_12890) - 2640321..2640905 (-) 585 WP_144663990.1 signal peptidase I -
  NYE62_RS12895 (NYE62_12895) tapA 2640877..2641548 (-) 672 WP_095352946.1 amyloid fiber anchoring/assembly protein TapA -
  NYE62_RS12900 (NYE62_12900) - 2641807..2642136 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  NYE62_RS12905 (NYE62_12905) - 2642176..2642355 (-) 180 WP_003153093.1 YqzE family protein -
  NYE62_RS12910 (NYE62_12910) comGG 2642412..2642789 (-) 378 WP_015417814.1 competence type IV pilus minor pilin ComGG Machinery gene
  NYE62_RS12915 (NYE62_12915) comGF 2642790..2643290 (-) 501 WP_260854721.1 competence type IV pilus minor pilin ComGF -
  NYE62_RS12920 (NYE62_12920) comGE 2643199..2643513 (-) 315 WP_144663989.1 competence type IV pilus minor pilin ComGE Machinery gene
  NYE62_RS12925 (NYE62_12925) comGD 2643497..2643934 (-) 438 WP_012117983.1 competence type IV pilus minor pilin ComGD Machinery gene
  NYE62_RS12930 (NYE62_12930) comGC 2643924..2644232 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=986214 NYE62_RS12880 WP_003153104.1 2639088..2639423(+) (sinR) [Bacillus sp. FSL K6-2861]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=986214 NYE62_RS12880 WP_003153104.1 2639088..2639423(+) (sinR) [Bacillus sp. FSL K6-2861]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment