Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NYE42_RS17735 Genome accession   NZ_CP152036
Coordinates   3601474..3602163 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus sp. FSL K6-2865     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3596474..3607163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE42_RS17700 (NYE42_17680) - 3596671..3597153 (-) 483 WP_352426617.1 flagellar protein FlgN -
  NYE42_RS17705 (NYE42_17685) flgM 3597168..3597434 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  NYE42_RS17710 (NYE42_17690) - 3597504..3597923 (-) 420 WP_251257246.1 TIGR03826 family flagellar region protein -
  NYE42_RS17715 (NYE42_17695) comFC 3597997..3598686 (-) 690 WP_197061611.1 phosphoribosyltransferase family protein Machinery gene
  NYE42_RS17720 (NYE42_17700) - 3598692..3598976 (-) 285 WP_003151389.1 competence protein ComFB -
  NYE42_RS17725 (NYE42_17705) comFA 3599034..3600419 (-) 1386 WP_352426618.1 DEAD/DEAH box helicase Machinery gene
  NYE42_RS17730 (NYE42_17710) - 3600528..3601376 (-) 849 WP_007407483.1 DegV family protein -
  NYE42_RS17735 (NYE42_17715) degU 3601474..3602163 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NYE42_RS17740 (NYE42_17720) degS 3602240..3603403 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  NYE42_RS17745 (NYE42_17725) - 3603626..3604273 (+) 648 WP_003151384.1 YigZ family protein -
  NYE42_RS17750 (NYE42_17730) - 3604278..3605492 (+) 1215 WP_015418337.1 LCP family protein -
  NYE42_RS17755 (NYE42_17735) - 3605582..3606658 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=986164 NYE42_RS17735 WP_003219701.1 3601474..3602163(-) (degU) [Bacillus sp. FSL K6-2865]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=986164 NYE42_RS17735 WP_003219701.1 3601474..3602163(-) (degU) [Bacillus sp. FSL K6-2865]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACTGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment