Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   NYE42_RS17715 Genome accession   NZ_CP152036
Coordinates   3597997..3598686 (-) Length   229 a.a.
NCBI ID   WP_197061611.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-2865     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3592997..3603686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE42_RS17680 (NYE42_17660) fliW 3593087..3593518 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  NYE42_RS17685 (NYE42_17665) - 3593548..3594117 (-) 570 WP_039253655.1 DUF6470 family protein -
  NYE42_RS17690 (NYE42_17670) flgL 3594209..3595126 (-) 918 WP_015418330.1 flagellar hook-associated protein FlgL -
  NYE42_RS17695 (NYE42_17675) flgK 3595138..3596655 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  NYE42_RS17700 (NYE42_17680) - 3596671..3597153 (-) 483 WP_352426617.1 flagellar protein FlgN -
  NYE42_RS17705 (NYE42_17685) flgM 3597168..3597434 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  NYE42_RS17710 (NYE42_17690) - 3597504..3597923 (-) 420 WP_251257246.1 TIGR03826 family flagellar region protein -
  NYE42_RS17715 (NYE42_17695) comFC 3597997..3598686 (-) 690 WP_197061611.1 phosphoribosyltransferase family protein Machinery gene
  NYE42_RS17720 (NYE42_17700) - 3598692..3598976 (-) 285 WP_003151389.1 competence protein ComFB -
  NYE42_RS17725 (NYE42_17705) comFA 3599034..3600419 (-) 1386 WP_352426618.1 DEAD/DEAH box helicase Machinery gene
  NYE42_RS17730 (NYE42_17710) - 3600528..3601376 (-) 849 WP_007407483.1 DegV family protein -
  NYE42_RS17735 (NYE42_17715) degU 3601474..3602163 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NYE42_RS17740 (NYE42_17720) degS 3602240..3603403 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25229.83 Da        Isoelectric Point: 8.0779

>NTDB_id=986162 NYE42_RS17715 WP_197061611.1 3597997..3598686(-) (comFC) [Bacillus sp. FSL K6-2865]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=986162 NYE42_RS17715 WP_197061611.1 3597997..3598686(-) (comFC) [Bacillus sp. FSL K6-2865]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAATCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGTTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTATATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594

Multiple sequence alignment