Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   NYE42_RS17725 Genome accession   NZ_CP152036
Coordinates   3599034..3600419 (-) Length   461 a.a.
NCBI ID   WP_352426618.1    Uniprot ID   -
Organism   Bacillus sp. FSL K6-2865     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3594034..3605419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE42_RS17690 (NYE42_17670) flgL 3594209..3595126 (-) 918 WP_015418330.1 flagellar hook-associated protein FlgL -
  NYE42_RS17695 (NYE42_17675) flgK 3595138..3596655 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  NYE42_RS17700 (NYE42_17680) - 3596671..3597153 (-) 483 WP_352426617.1 flagellar protein FlgN -
  NYE42_RS17705 (NYE42_17685) flgM 3597168..3597434 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  NYE42_RS17710 (NYE42_17690) - 3597504..3597923 (-) 420 WP_251257246.1 TIGR03826 family flagellar region protein -
  NYE42_RS17715 (NYE42_17695) comFC 3597997..3598686 (-) 690 WP_197061611.1 phosphoribosyltransferase family protein Machinery gene
  NYE42_RS17720 (NYE42_17700) - 3598692..3598976 (-) 285 WP_003151389.1 competence protein ComFB -
  NYE42_RS17725 (NYE42_17705) comFA 3599034..3600419 (-) 1386 WP_352426618.1 DEAD/DEAH box helicase Machinery gene
  NYE42_RS17730 (NYE42_17710) - 3600528..3601376 (-) 849 WP_007407483.1 DegV family protein -
  NYE42_RS17735 (NYE42_17715) degU 3601474..3602163 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NYE42_RS17740 (NYE42_17720) degS 3602240..3603403 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  NYE42_RS17745 (NYE42_17725) - 3603626..3604273 (+) 648 WP_003151384.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52503.85 Da        Isoelectric Point: 10.1839

>NTDB_id=986163 NYE42_RS17725 WP_352426618.1 3599034..3600419(-) (comFA) [Bacillus sp. FSL K6-2865]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFTEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVVMGRADELTSLYSWNQAHENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNVRAEGVHAEDTFRKDKVKRFRDGGLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=986163 NYE42_RS17725 WP_352426618.1 3599034..3600419(-) (comFA) [Bacillus sp. FSL K6-2865]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGACCAGCGTATTAAGCGTTTTACAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAATCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCGTGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCATGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCTCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGATTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACTCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCTCGCTCTGTAACCGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACATGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAATGTAAGGGCAGAAGGCGTTCATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCGGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACCGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(328-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.391

99.783

0.623
  comFA Latilactobacillus sakei subsp. sakei 23K

39.904

90.239

0.36

Multiple sequence alignment